Cluster: HRGMv2_2400_CGC22
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2400
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2400_111 | HRGMv2_2400_111_5 | 4500 | 5426 | - | GT2 |
| pfam | HRGMv2_2400_111 | HRGMv2_2400_111_6 | 5501 | 6649 | - | LytR_cpsA_psr |
| TC | HRGMv2_2400_111 | HRGMv2_2400_111_7 | 6674 | 8077 | - | 9.B.18.1.1 |
| CAZyme | HRGMv2_2400_111 | HRGMv2_2400_111_8 | 8151 | 9125 | - | GT2 |
| CAZyme | HRGMv2_2400_111 | HRGMv2_2400_111_9 | 9155 | 9685 | - | GT2 |
Gene ID: HRGMv2_2400_111_5
Type: CAZyme
Location: 4500 - 5426 (-)
Type: CAZyme
Location: 4500 - 5426 (-)
Gene ID: HRGMv2_2400_111_6
Type: pfam
Location: 5501 - 6649 (-)
Type: pfam
Location: 5501 - 6649 (-)
Gene ID: HRGMv2_2400_111_7
Type: TC
Location: 6674 - 8077 (-)
Type: TC
Location: 6674 - 8077 (-)
Gene ID: HRGMv2_2400_111_8
Type: CAZyme
Location: 8151 - 9125 (-)
Type: CAZyme
Location: 8151 - 9125 (-)
Gene ID: HRGMv2_2400_111_9
Type: CAZyme
Location: 9155 - 9685 (-)
Type: CAZyme
Location: 9155 - 9685 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Ruminococcus_G
Species
Ruminococcus_G gauvreauii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.