Cluster: HRGMv2_2400_CGC21
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2400
- CGC Family ID: CGCFAM_00009
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2400_104 | HRGMv2_2400_104_1 | 2 | 2434 | - | GT2 | GT2 |
| NULL(UNKNOWN) | HRGMv2_2400_104 | HRGMv2_2400_104_2 | 2438 | 3739 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2400_104 | HRGMv2_2400_104_3 | 3736 | 4686 | - | PCMT | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 |
| TC | HRGMv2_2400_104 | HRGMv2_2400_104_4 | 4696 | 5979 | - | 3.A.1.103.6 |
| TC | HRGMv2_2400_104 | HRGMv2_2400_104_5 | 5993 | 6808 | - | 3.A.1.104.1 |
Gene ID: HRGMv2_2400_104_1
Type: CAZyme
Location: 2 - 2434 (-)
Type: CAZyme
Location: 2 - 2434 (-)
Gene ID: HRGMv2_2400_104_2
Type:
Location: 2438 - 3739 (-)
Type:
Location: 2438 - 3739 (-)
Gene ID: HRGMv2_2400_104_3
Type: pfam
Location: 3736 - 4686 (-)
Type: pfam
Location: 3736 - 4686 (-)
Gene ID: HRGMv2_2400_104_4
Type: TC
Location: 4696 - 5979 (-)
Type: TC
Location: 4696 - 5979 (-)
Gene ID: HRGMv2_2400_104_5
Type: TC
Location: 5993 - 6808 (-)
Type: TC
Location: 5993 - 6808 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Ruminococcus_G
Species
Ruminococcus_G gauvreauii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.