Cluster: HRGMv2_2400_CGC20
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2400
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2400_95 | HRGMv2_2400_95_5 | 4933 | 7536 | + | 3.A.3.2.21 |
| sulfatase | HRGMv2_2400_95 | HRGMv2_2400_95_6 | 7625 | 8665 | + | S1_4 |
| pfam | HRGMv2_2400_95 | HRGMv2_2400_95_7 | 8718 | 9251 | - | Isochorismatase |
| CAZyme | HRGMv2_2400_95 | HRGMv2_2400_95_8 | 9492 | 10721 | + | GT4 |
| CAZyme | HRGMv2_2400_95 | HRGMv2_2400_95_9 | 10703 | 11752 | + | GT4 |
Gene ID: HRGMv2_2400_95_5
Type: TC
Location: 4933 - 7536 (+)
Type: TC
Location: 4933 - 7536 (+)
Gene ID: HRGMv2_2400_95_6
Type: sulfatase
Location: 7625 - 8665 (+)
Type: sulfatase
Location: 7625 - 8665 (+)
Gene ID: HRGMv2_2400_95_7
Type: pfam
Location: 8718 - 9251 (-)
Type: pfam
Location: 8718 - 9251 (-)
Gene ID: HRGMv2_2400_95_8
Type: CAZyme
Location: 9492 - 10721 (+)
Type: CAZyme
Location: 9492 - 10721 (+)
Gene ID: HRGMv2_2400_95_9
Type: CAZyme
Location: 10703 - 11752 (+)
Type: CAZyme
Location: 10703 - 11752 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Ruminococcus_G
Species
Ruminococcus_G gauvreauii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.