Cluster: HRGMv2_2400_CGC19
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2400
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2400_94 | HRGMv2_2400_94_10 | 8657 | 10024 | + | 2.A.66.1.32 |
| TC | HRGMv2_2400_94 | HRGMv2_2400_94_11 | 10028 | 11233 | - | 2.A.1.21.22 |
| TC | HRGMv2_2400_94 | HRGMv2_2400_94_12 | 11649 | 12998 | + | 2.A.26.1.3 |
| CAZyme | HRGMv2_2400_94 | HRGMv2_2400_94_13 | 13064 | 13888 | + | CE4 |
| CAZyme | HRGMv2_2400_94 | HRGMv2_2400_94_14 | 13899 | 14492 | + | GH18 |
Gene ID: HRGMv2_2400_94_10
Type: TC
Location: 8657 - 10024 (+)
Type: TC
Location: 8657 - 10024 (+)
Gene ID: HRGMv2_2400_94_11
Type: TC
Location: 10028 - 11233 (-)
Type: TC
Location: 10028 - 11233 (-)
Gene ID: HRGMv2_2400_94_12
Type: TC
Location: 11649 - 12998 (+)
Type: TC
Location: 11649 - 12998 (+)
Gene ID: HRGMv2_2400_94_13
Type: CAZyme
Location: 13064 - 13888 (+)
Type: CAZyme
Location: 13064 - 13888 (+)
Gene ID: HRGMv2_2400_94_14
Type: CAZyme
Location: 13899 - 14492 (+)
Type: CAZyme
Location: 13899 - 14492 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Ruminococcus_G
Species
Ruminococcus_G gauvreauii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.