Cluster: HRGMv2_2400_CGC18
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2400
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2400_88 | HRGMv2_2400_88_3 | 660 | 2444 | - | CE1 |
| CAZyme | HRGMv2_2400_88 | HRGMv2_2400_88_4 | 2466 | 4214 | - | CE1 |
| TC | HRGMv2_2400_88 | HRGMv2_2400_88_5 | 4284 | 5297 | - | 3.A.1.2.21 |
| TC | HRGMv2_2400_88 | HRGMv2_2400_88_6 | 5359 | 6357 | - | 3.A.1.2.15 |
| TC | HRGMv2_2400_88 | HRGMv2_2400_88_7 | 6383 | 7876 | - | 3.A.1.2.26 |
Gene ID: HRGMv2_2400_88_3
Type: CAZyme
Location: 660 - 2444 (-)
Type: CAZyme
Location: 660 - 2444 (-)
Gene ID: HRGMv2_2400_88_4
Type: CAZyme
Location: 2466 - 4214 (-)
Type: CAZyme
Location: 2466 - 4214 (-)
Gene ID: HRGMv2_2400_88_5
Type: TC
Location: 4284 - 5297 (-)
Type: TC
Location: 4284 - 5297 (-)
Gene ID: HRGMv2_2400_88_6
Type: TC
Location: 5359 - 6357 (-)
Type: TC
Location: 5359 - 6357 (-)
Gene ID: HRGMv2_2400_88_7
Type: TC
Location: 6383 - 7876 (-)
Type: TC
Location: 6383 - 7876 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Ruminococcus_G
Species
Ruminococcus_G gauvreauii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.