Cluster: HRGMv2_2400_CGC15
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2400
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2400_50 | HRGMv2_2400_50_8 | 5204 | 5971 | - | CE4 |
| pfam | HRGMv2_2400_50 | HRGMv2_2400_50_9 | 6168 | 6773 | + | DUF308 | DUF308 | DUF308 |
| pfam | HRGMv2_2400_50 | HRGMv2_2400_50_10 | 6835 | 8922 | - | FtsX |
| TC | HRGMv2_2400_50 | HRGMv2_2400_50_11 | 8919 | 9665 | - | 3.A.1.134.6 |
Gene ID: HRGMv2_2400_50_8
Type: CAZyme
Location: 5204 - 5971 (-)
Type: CAZyme
Location: 5204 - 5971 (-)
Gene ID: HRGMv2_2400_50_9
Type: pfam
Location: 6168 - 6773 (+)
Type: pfam
Location: 6168 - 6773 (+)
Gene ID: HRGMv2_2400_50_10
Type: pfam
Location: 6835 - 8922 (-)
Type: pfam
Location: 6835 - 8922 (-)
Gene ID: HRGMv2_2400_50_11
Type: TC
Location: 8919 - 9665 (-)
Type: TC
Location: 8919 - 9665 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Ruminococcus_G
Species
Ruminococcus_G gauvreauii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.