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Cluster: HRGMv2_2400_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2400_27 HRGMv2_2400_27_30 28428 29876 - 2.A.66.2.2
pfam HRGMv2_2400_27 HRGMv2_2400_27_31 29863 31314 - O-ag_pol_Wzy
CAZyme HRGMv2_2400_27 HRGMv2_2400_27_32 31349 32581 - GT4
pfam HRGMv2_2400_27 HRGMv2_2400_27_33 32620 33822 - GARS_A | ATP-grasp | ATP-grasp_3 | CPSase_L_D2 | ATP-grasp_4 | LAL_C2
TC HRGMv2_2400_27 HRGMv2_2400_27_34 33833 34450 - 9.B.18.1.1
pfam HRGMv2_2400_27 HRGMv2_2400_27_35 34452 35642 - GARS_A | ATP-grasp | ATP-grasp_3 | CPSase_L_D2 | Dala_Dala_lig_C | ATP-grasp_4 | LAL_C2
CAZyme HRGMv2_2400_27 HRGMv2_2400_27_36 35650 36300 - CE14
Gene ID: HRGMv2_2400_27_30
Type: TC
Location: 28428 - 29876 (-)
Gene ID: HRGMv2_2400_27_31
Type: pfam
Location: 29863 - 31314 (-)
Gene ID: HRGMv2_2400_27_32
Type: CAZyme
Location: 31349 - 32581 (-)
Gene ID: HRGMv2_2400_27_33
Type: pfam
Location: 32620 - 33822 (-)
Gene ID: HRGMv2_2400_27_34
Type: TC
Location: 33833 - 34450 (-)
Gene ID: HRGMv2_2400_27_35
Type: pfam
Location: 34452 - 35642 (-)
Gene ID: HRGMv2_2400_27_36
Type: CAZyme
Location: 35650 - 36300 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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