Cluster: HRGMv2_2400_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2400
- CGC Family ID: CGCFAM_00845
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2400_3 | HRGMv2_2400_3_12 | 12319 | 13053 | - | 3.A.1.103.4 |
| pfam | HRGMv2_2400_3 | HRGMv2_2400_3_13 | 13057 | 13836 | - | ABC2_membrane |
| TC | HRGMv2_2400_3 | HRGMv2_2400_3_14 | 13942 | 15342 | - | 9.B.18.1.3 |
| pfam | HRGMv2_2400_3 | HRGMv2_2400_3_15 | 15587 | 16777 | - | Glyphos_transf |
| CAZyme | HRGMv2_2400_3 | HRGMv2_2400_3_16 | 16774 | 17910 | - | GT4 |
Gene ID: HRGMv2_2400_3_12
Type: TC
Location: 12319 - 13053 (-)
Type: TC
Location: 12319 - 13053 (-)
Gene ID: HRGMv2_2400_3_13
Type: pfam
Location: 13057 - 13836 (-)
Type: pfam
Location: 13057 - 13836 (-)
Gene ID: HRGMv2_2400_3_14
Type: TC
Location: 13942 - 15342 (-)
Type: TC
Location: 13942 - 15342 (-)
Gene ID: HRGMv2_2400_3_15
Type: pfam
Location: 15587 - 16777 (-)
Type: pfam
Location: 15587 - 16777 (-)
Gene ID: HRGMv2_2400_3_16
Type: CAZyme
Location: 16774 - 17910 (-)
Type: CAZyme
Location: 16774 - 17910 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Ruminococcus_G
Species
Ruminococcus_G gauvreauii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.