dbCAN HGM

Cluster: HRGMv2_2379_CGC8

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	HRGMv2_2379_19	HRGMv2_2379_19_18	17496	18428	+	3.A.5.1.1
STP	HRGMv2_2379_19	HRGMv2_2379_19_19	18429	19646	+	ACT \| PALP
CAZyme	HRGMv2_2379_19	HRGMv2_2379_19_20	20022	22526	+	CBM48 \| GH13_9
pfam	HRGMv2_2379_19	HRGMv2_2379_19_21	22590	23774	+	NTP_transferase \| Hexapep_GlmU
pfam	HRGMv2_2379_19	HRGMv2_2379_19_22	23787	24920	+	NTP_transferase \| Hexapep_GlmU
CAZyme	HRGMv2_2379_19	HRGMv2_2379_19_23	24913	26352	+	GT5
CAZyme	HRGMv2_2379_19	HRGMv2_2379_19_24	26374	27771	+	GT35

Gene ID: HRGMv2_2379_19_18
Type: TC
Location: 17496 - 18428 (+)

Gene ID: HRGMv2_2379_19_19
Type: STP
Location: 18429 - 19646 (+)

Gene ID: HRGMv2_2379_19_20
Type: CAZyme
Location: 20022 - 22526 (+)

Gene ID: HRGMv2_2379_19_21
Type: pfam
Location: 22590 - 23774 (+)

Gene ID: HRGMv2_2379_19_22
Type: pfam
Location: 23787 - 24920 (+)

Gene ID: HRGMv2_2379_19_23
Type: CAZyme
Location: 24913 - 26352 (+)

Gene ID: HRGMv2_2379_19_24
Type: CAZyme
Location: 26374 - 27771 (+)

Taxonomic Lineage

Domain

→

Phylum

→

Class

→

Order

→

Family

→

Genus

→

Species

Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Gene ID	Condition Pair	log2FC	FDR P-value
HRGMv2_2379_19_18	vegetarian > omnivore	2.19930	0.01815
HRGMv2_2379_19_19	vegetarian > omnivore	1.15946	0.00000
HRGMv2_2379_19_23	vegan > omnivore	2.02514	0.00433