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Cluster: HRGMv2_2379_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2379_8 HRGMv2_2379_8_25 22642 23376 + 9.B.158.1.1
STP HRGMv2_2379_8 HRGMv2_2379_8_26 23406 24074 + ACT
pfam HRGMv2_2379_8 HRGMv2_2379_8_27 24078 24944 + SDH_alpha
CAZyme HRGMv2_2379_8 HRGMv2_2379_8_28 25037 25972 + GT2
pfam HRGMv2_2379_8 HRGMv2_2379_8_29 25969 28629 + YfhO
TF HRGMv2_2379_8 HRGMv2_2379_8_30 28610 29053 - Rrf2
TC HRGMv2_2379_8 HRGMv2_2379_8_31 29295 32252 + 9.B.74.1.3
pfam HRGMv2_2379_8 HRGMv2_2379_8_32 32503 33630 + Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Choline_bind_1 | Transglut_core | Choline_bind_3
TC HRGMv2_2379_8 HRGMv2_2379_8_33 33641 35038 + 2.A.50.2.1
Gene ID: HRGMv2_2379_8_25
Type: TC
Location: 22642 - 23376 (+)
Gene ID: HRGMv2_2379_8_26
Type: STP
Location: 23406 - 24074 (+)
Gene ID: HRGMv2_2379_8_27
Type: pfam
Location: 24078 - 24944 (+)
Gene ID: HRGMv2_2379_8_28
Type: CAZyme
Location: 25037 - 25972 (+)
Gene ID: HRGMv2_2379_8_29
Type: pfam
Location: 25969 - 28629 (+)
Gene ID: HRGMv2_2379_8_30
Type: TF
Location: 28610 - 29053 (-)
Gene ID: HRGMv2_2379_8_31
Type: TC
Location: 29295 - 32252 (+)
Gene ID: HRGMv2_2379_8_32
Type: pfam
Location: 32503 - 33630 (+)
Gene ID: HRGMv2_2379_8_33
Type: TC
Location: 33641 - 35038 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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