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Cluster: HRGMv2_2379_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2379_94 HRGMv2_2379_94_1 144 1598 + 9.B.18.1.2
pfam HRGMv2_2379_94 HRGMv2_2379_94_2 1628 2083 + Alg14
pfam HRGMv2_2379_94 HRGMv2_2379_94_3 2095 2589 + Glyco_tran_28_C
CAZyme HRGMv2_2379_94 HRGMv2_2379_94_4 2594 3697 + GT4
CAZyme HRGMv2_2379_94 HRGMv2_2379_94_5 3773 4498 + GT32
pfam HRGMv2_2379_94 HRGMv2_2379_94_6 4518 5855 + Wzy_C
CAZyme HRGMv2_2379_94 HRGMv2_2379_94_7 5861 6874 + GT113
TC HRGMv2_2379_94 HRGMv2_2379_94_8 6899 8368 + 2.A.66.2.16
Gene ID: HRGMv2_2379_94_1
Type: TC
Location: 144 - 1598 (+)
Gene ID: HRGMv2_2379_94_2
Type: pfam
Location: 1628 - 2083 (+)
Gene ID: HRGMv2_2379_94_3
Type: pfam
Location: 2095 - 2589 (+)
Gene ID: HRGMv2_2379_94_4
Type: CAZyme
Location: 2594 - 3697 (+)
Gene ID: HRGMv2_2379_94_5
Type: CAZyme
Location: 3773 - 4498 (+)
Gene ID: HRGMv2_2379_94_6
Type: pfam
Location: 4518 - 5855 (+)
Gene ID: HRGMv2_2379_94_7
Type: CAZyme
Location: 5861 - 6874 (+)
Gene ID: HRGMv2_2379_94_8
Type: TC
Location: 6899 - 8368 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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