Cluster: HRGMv2_2379_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2379
- CGC Family ID: CGCFAM_01014
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2379_37 | HRGMv2_2379_37_17 | 15685 | 17118 | - | 2.A.2.3.3 |
| pfam | HRGMv2_2379_37 | HRGMv2_2379_37_18 | 17134 | 17964 | - | AP_endonuc_2 |
| CAZyme | HRGMv2_2379_37 | HRGMv2_2379_37_19 | 18074 | 19078 | - | GH177 |
| TF | HRGMv2_2379_37 | HRGMv2_2379_37_20 | 19267 | 20292 | - | LacI |
| TC | HRGMv2_2379_37 | HRGMv2_2379_37_21 | 20418 | 21527 | - | 2.A.66.1.28 |
Gene ID: HRGMv2_2379_37_17
Type: TC
Location: 15685 - 17118 (-)
Type: TC
Location: 15685 - 17118 (-)
Gene ID: HRGMv2_2379_37_18
Type: pfam
Location: 17134 - 17964 (-)
Type: pfam
Location: 17134 - 17964 (-)
Gene ID: HRGMv2_2379_37_19
Type: CAZyme
Location: 18074 - 19078 (-)
Type: CAZyme
Location: 18074 - 19078 (-)
Gene ID: HRGMv2_2379_37_20
Type: TF
Location: 19267 - 20292 (-)
Type: TF
Location: 19267 - 20292 (-)
Gene ID: HRGMv2_2379_37_21
Type: TC
Location: 20418 - 21527 (-)
Type: TC
Location: 20418 - 21527 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Anaerostipes
Species
Anaerostipes sp018918155
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2379_37_17 | vegan > omnivore | 17.76323 | 0.00433 |
| HRGMv2_2379_37_17 | vegetarian > omnivore | 14.36589 | 0.02194 |
| HRGMv2_2379_37_18 | vegan > omnivore | 1.89507 | 0.00433 |
| HRGMv2_2379_37_19 | vegan > omnivore | 2.03589 | 0.00433 |
| HRGMv2_2379_37_20 | vegan > omnivore | 16.18957 | 0.00433 |
| HRGMv2_2379_37_20 | vegetarian > omnivore | 18.02982 | 0.01815 |