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Cluster: HRGMv2_2337_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2337_8 HRGMv2_2337_8_7 5635 6645 + GT2
TC HRGMv2_2337_8 HRGMv2_2337_8_8 6645 8090 + 2.A.66.2.16
CAZyme HRGMv2_2337_8 HRGMv2_2337_8_9 8090 9061 + GT2
pfam HRGMv2_2337_8 HRGMv2_2337_8_10 9070 10215 + Glycos_transf_2
CAZyme HRGMv2_2337_8 HRGMv2_2337_8_11 10236 11387 + GT4
CAZyme HRGMv2_2337_8 HRGMv2_2337_8_12 11415 12326 - GT11
CAZyme HRGMv2_2337_8 HRGMv2_2337_8_13 12457 13674 + GT4
TC HRGMv2_2337_8 HRGMv2_2337_8_14 13735 15600 + 9.B.18.2.1
pfam HRGMv2_2337_8 HRGMv2_2337_8_15 15603 16736 + Aminotran_1_2 | DegT_DnrJ_EryC1
TC HRGMv2_2337_8 HRGMv2_2337_8_16 16740 17405 + 9.B.18.1.3
Gene ID: HRGMv2_2337_8_7
Type: CAZyme
Location: 5635 - 6645 (+)
Gene ID: HRGMv2_2337_8_8
Type: TC
Location: 6645 - 8090 (+)
Gene ID: HRGMv2_2337_8_9
Type: CAZyme
Location: 8090 - 9061 (+)
Gene ID: HRGMv2_2337_8_10
Type: pfam
Location: 9070 - 10215 (+)
Gene ID: HRGMv2_2337_8_11
Type: CAZyme
Location: 10236 - 11387 (+)
Gene ID: HRGMv2_2337_8_12
Type: CAZyme
Location: 11415 - 12326 (-)
Gene ID: HRGMv2_2337_8_13
Type: CAZyme
Location: 12457 - 13674 (+)
Gene ID: HRGMv2_2337_8_14
Type: TC
Location: 13735 - 15600 (+)
Gene ID: HRGMv2_2337_8_15
Type: pfam
Location: 15603 - 16736 (+)
Gene ID: HRGMv2_2337_8_16
Type: TC
Location: 16740 - 17405 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Hominiventricola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2337_8_16 vegetarian > vegan 1.24872 0.00863

🧭 Explore Read Mapping of CGC

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