Cluster: HRGMv2_2335_CGC5
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_2335
- CGC Family ID: CGCFAM_01016
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2335_3 | HRGMv2_2335_3_29 | 28987 | 30813 | + | GH2 |
| NULL(UNKNOWN) | HRGMv2_2335_3 | HRGMv2_2335_3_30 | 31222 | 31422 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2335_3 | HRGMv2_2335_3_31 | 31504 | 31779 | - | DUF6171 |
| CAZyme | HRGMv2_2335_3 | HRGMv2_2335_3_32 | 31797 | 33305 | - | GH51_1 |
| CAZyme | HRGMv2_2335_3 | HRGMv2_2335_3_33 | 33340 | 34653 | - | GH28 |
| CAZyme | HRGMv2_2335_3 | HRGMv2_2335_3_34 | 34727 | 36877 | - | GH112 |
| CAZyme | HRGMv2_2335_3 | HRGMv2_2335_3_35 | 37001 | 38413 | - | CE12 |
| CAZyme | HRGMv2_2335_3 | HRGMv2_2335_3_36 | 38414 | 39466 | - | GH105 |
| NULL(UNKNOWN) | HRGMv2_2335_3 | HRGMv2_2335_3_37 | 39640 | 41367 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2335_3 | HRGMv2_2335_3_38 | 41452 | 42381 | - | 3.A.1.1.29 |
| TC | HRGMv2_2335_3 | HRGMv2_2335_3_39 | 42394 | 43347 | - | 3.A.1.1.29 |
| TF | HRGMv2_2335_3 | HRGMv2_2335_3_40 | 43775 | 44773 | + | HTH_AraC | HTH_AraC |
| TC | HRGMv2_2335_3 | HRGMv2_2335_3_41 | 44788 | 46122 | - | 2.A.66.1.33 |
Gene ID: HRGMv2_2335_3_29
Type: CAZyme
Location: 28987 - 30813 (+)
Type: CAZyme
Location: 28987 - 30813 (+)
Gene ID: HRGMv2_2335_3_30
Type:
Location: 31222 - 31422 (-)
Type:
Location: 31222 - 31422 (-)
Gene ID: HRGMv2_2335_3_31
Type: pfam
Location: 31504 - 31779 (-)
Type: pfam
Location: 31504 - 31779 (-)
Gene ID: HRGMv2_2335_3_32
Type: CAZyme
Location: 31797 - 33305 (-)
Type: CAZyme
Location: 31797 - 33305 (-)
Gene ID: HRGMv2_2335_3_33
Type: CAZyme
Location: 33340 - 34653 (-)
Type: CAZyme
Location: 33340 - 34653 (-)
Gene ID: HRGMv2_2335_3_34
Type: CAZyme
Location: 34727 - 36877 (-)
Type: CAZyme
Location: 34727 - 36877 (-)
Gene ID: HRGMv2_2335_3_35
Type: CAZyme
Location: 37001 - 38413 (-)
Type: CAZyme
Location: 37001 - 38413 (-)
Gene ID: HRGMv2_2335_3_36
Type: CAZyme
Location: 38414 - 39466 (-)
Type: CAZyme
Location: 38414 - 39466 (-)
Gene ID: HRGMv2_2335_3_37
Type:
Location: 39640 - 41367 (-)
Type:
Location: 39640 - 41367 (-)
Gene ID: HRGMv2_2335_3_38
Type: TC
Location: 41452 - 42381 (-)
Type: TC
Location: 41452 - 42381 (-)
Gene ID: HRGMv2_2335_3_39
Type: TC
Location: 42394 - 43347 (-)
Type: TC
Location: 42394 - 43347 (-)
Gene ID: HRGMv2_2335_3_40
Type: TF
Location: 43775 - 44773 (+)
Type: TF
Location: 43775 - 44773 (+)
Gene ID: HRGMv2_2335_3_41
Type: TC
Location: 44788 - 46122 (-)
Type: TC
Location: 44788 - 46122 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Species
Acetatifactor sp934436435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.