Cluster: HRGMv2_2335_CGC40
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2335
- CGC Family ID: CGCFAM_03621
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2335_62 | HRGMv2_2335_62_13 | 11981 | 13246 | - | GH30_1 |
| TF | HRGMv2_2335_62 | HRGMv2_2335_62_14 | 13349 | 14080 | - | HTH_AraC | HTH_AraC |
| TC | HRGMv2_2335_62 | HRGMv2_2335_62_15 | 14082 | 15887 | - | 8.A.59.2.1 |
| TC | HRGMv2_2335_62 | HRGMv2_2335_62_16 | 15917 | 16762 | - | 3.A.1.1.7 |
| TC | HRGMv2_2335_62 | HRGMv2_2335_62_17 | 16762 | 17409 | - | 3.A.1.1.18 |
| NULL(UNKNOWN) | HRGMv2_2335_62 | HRGMv2_2335_62_18 | 17512 | 17667 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2335_62 | HRGMv2_2335_62_19 | 17785 | 19146 | - | 3.A.1.1.21 |
Gene ID: HRGMv2_2335_62_13
Type: CAZyme
Location: 11981 - 13246 (-)
Type: CAZyme
Location: 11981 - 13246 (-)
Gene ID: HRGMv2_2335_62_14
Type: TF
Location: 13349 - 14080 (-)
Type: TF
Location: 13349 - 14080 (-)
Gene ID: HRGMv2_2335_62_15
Type: TC
Location: 14082 - 15887 (-)
Type: TC
Location: 14082 - 15887 (-)
Gene ID: HRGMv2_2335_62_16
Type: TC
Location: 15917 - 16762 (-)
Type: TC
Location: 15917 - 16762 (-)
Gene ID: HRGMv2_2335_62_17
Type: TC
Location: 16762 - 17409 (-)
Type: TC
Location: 16762 - 17409 (-)
Gene ID: HRGMv2_2335_62_18
Type:
Location: 17512 - 17667 (-)
Type:
Location: 17512 - 17667 (-)
Gene ID: HRGMv2_2335_62_19
Type: TC
Location: 17785 - 19146 (-)
Type: TC
Location: 17785 - 19146 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Species
Acetatifactor sp934436435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.