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Cluster: HRGMv2_2335_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2335_55 HRGMv2_2335_55_6 3826 5337 - GH51_1
TF HRGMv2_2335_55 HRGMv2_2335_55_7 5430 6464 - LacI
TC HRGMv2_2335_55 HRGMv2_2335_55_8 6541 7401 - 3.A.1.1.11
TC HRGMv2_2335_55 HRGMv2_2335_55_9 7405 8319 - 3.A.1.1.11
STP HRGMv2_2335_55 HRGMv2_2335_55_10 8463 9893 - SBP_bac_1
CAZyme HRGMv2_2335_55 HRGMv2_2335_55_11 9982 11922 - GH127
Gene ID: HRGMv2_2335_55_6
Type: CAZyme
Location: 3826 - 5337 (-)
Gene ID: HRGMv2_2335_55_7
Type: TF
Location: 5430 - 6464 (-)
Gene ID: HRGMv2_2335_55_8
Type: TC
Location: 6541 - 7401 (-)
Gene ID: HRGMv2_2335_55_9
Type: TC
Location: 7405 - 8319 (-)
Gene ID: HRGMv2_2335_55_10
Type: STP
Location: 8463 - 9893 (-)
Gene ID: HRGMv2_2335_55_11
Type: CAZyme
Location: 9982 - 11922 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2335_55_8 vegan > omnivore 3.43557 0.04549

🧭 Explore Read Mapping of CGC

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