dbCAN Logo

Cluster: HRGMv2_2335_CGC38

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2335_49 HRGMv2_2335_49_4 2307 3674 - 3.A.1.121.4
CAZyme HRGMv2_2335_49 HRGMv2_2335_49_5 3889 5826 - PL33_1
TF HRGMv2_2335_49 HRGMv2_2335_49_6 5881 7479 - HTH_AraC | HTH_AraC
TC HRGMv2_2335_49 HRGMv2_2335_49_7 7565 9304 - 8.A.59.2.1
STP HRGMv2_2335_49 HRGMv2_2335_49_8 9646 11013 + SBP_bac_1
TC HRGMv2_2335_49 HRGMv2_2335_49_9 11147 12046 + 3.A.1.1.20
pfam HRGMv2_2335_49 HRGMv2_2335_49_10 12046 12837 + DUF7402
TC HRGMv2_2335_49 HRGMv2_2335_49_11 12852 13691 + 3.A.1.1.11
CAZyme HRGMv2_2335_49 HRGMv2_2335_49_12 13911 15083 + GH88
CAZyme HRGMv2_2335_49 HRGMv2_2335_49_13 15085 16824 + GH154
Gene ID: HRGMv2_2335_49_4
Type: TC
Location: 2307 - 3674 (-)
Gene ID: HRGMv2_2335_49_5
Type: CAZyme
Location: 3889 - 5826 (-)
Gene ID: HRGMv2_2335_49_6
Type: TF
Location: 5881 - 7479 (-)
Gene ID: HRGMv2_2335_49_7
Type: TC
Location: 7565 - 9304 (-)
Gene ID: HRGMv2_2335_49_8
Type: STP
Location: 9646 - 11013 (+)
Gene ID: HRGMv2_2335_49_9
Type: TC
Location: 11147 - 12046 (+)
Gene ID: HRGMv2_2335_49_10
Type: pfam
Location: 12046 - 12837 (+)
Gene ID: HRGMv2_2335_49_11
Type: TC
Location: 12852 - 13691 (+)
Gene ID: HRGMv2_2335_49_12
Type: CAZyme
Location: 13911 - 15083 (+)
Gene ID: HRGMv2_2335_49_13
Type: CAZyme
Location: 15085 - 16824 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List