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Cluster: HRGMv2_2335_CGC37

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2335_45 HRGMv2_2335_45_18 17867 18658 + 2.A.88.3.1
TF HRGMv2_2335_45 HRGMv2_2335_45_19 19217 19882 - SfsA
TC HRGMv2_2335_45 HRGMv2_2335_45_20 20208 21557 - 2.A.66.1.33
NULL(UNKNOWN) HRGMv2_2335_45 HRGMv2_2335_45_21 21562 22200 - NULL(UNKNOWN)
[View Structural Homologs]
STP HRGMv2_2335_45 HRGMv2_2335_45_22 22241 22801 - Sigma70_r2 | Sigma70_r4_2
TC HRGMv2_2335_45 HRGMv2_2335_45_23 22884 24641 - 1.B.52.2.1
pfam HRGMv2_2335_45 HRGMv2_2335_45_24 24764 25537 - ThiF
pfam HRGMv2_2335_45 HRGMv2_2335_45_25 25594 26430 - AP_endonuc_2
CAZyme HRGMv2_2335_45 HRGMv2_2335_45_26 26557 28113 - GH28
Gene ID: HRGMv2_2335_45_18
Type: TC
Location: 17867 - 18658 (+)
Gene ID: HRGMv2_2335_45_19
Type: TF
Location: 19217 - 19882 (-)
Gene ID: HRGMv2_2335_45_20
Type: TC
Location: 20208 - 21557 (-)
Gene ID: HRGMv2_2335_45_21
Type:
Location: 21562 - 22200 (-)
Gene ID: HRGMv2_2335_45_22
Type: STP
Location: 22241 - 22801 (-)
Gene ID: HRGMv2_2335_45_23
Type: TC
Location: 22884 - 24641 (-)
Gene ID: HRGMv2_2335_45_24
Type: pfam
Location: 24764 - 25537 (-)
Gene ID: HRGMv2_2335_45_25
Type: pfam
Location: 25594 - 26430 (-)
Gene ID: HRGMv2_2335_45_26
Type: CAZyme
Location: 26557 - 28113 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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