Cluster: HRGMv2_2335_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2335
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2335_2 | HRGMv2_2335_2_34 | 49736 | 50491 | - | 3.A.15.2.1 |
| pfam | HRGMv2_2335_2 | HRGMv2_2335_2_35 | 50526 | 50963 | - | N_methyl |
| TC | HRGMv2_2335_2 | HRGMv2_2335_2_36 | 51068 | 52282 | - | 3.A.15.2.1 |
| TC | HRGMv2_2335_2 | HRGMv2_2335_2_37 | 52405 | 54096 | - | 3.A.15.4.1 |
| NULL(UNKNOWN) | HRGMv2_2335_2 | HRGMv2_2335_2_38 | 54262 | 54741 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2335_2 | HRGMv2_2335_2_39 | 55062 | 56012 | - | GH26 |
Gene ID: HRGMv2_2335_2_34
Type: TC
Location: 49736 - 50491 (-)
Type: TC
Location: 49736 - 50491 (-)
Gene ID: HRGMv2_2335_2_35
Type: pfam
Location: 50526 - 50963 (-)
Type: pfam
Location: 50526 - 50963 (-)
Gene ID: HRGMv2_2335_2_36
Type: TC
Location: 51068 - 52282 (-)
Type: TC
Location: 51068 - 52282 (-)
Gene ID: HRGMv2_2335_2_37
Type: TC
Location: 52405 - 54096 (-)
Type: TC
Location: 52405 - 54096 (-)
Gene ID: HRGMv2_2335_2_38
Type:
Location: 54262 - 54741 (-)
Type:
Location: 54262 - 54741 (-)
Gene ID: HRGMv2_2335_2_39
Type: CAZyme
Location: 55062 - 56012 (-)
Type: CAZyme
Location: 55062 - 56012 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Species
Acetatifactor sp934436435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2335_2_38 | vegetarian > vegan | 1.67374 | 0.00364 |