Cluster: HRGMv2_2335_CGC28
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_2335
- CGC Family ID: CGCFAM_00168
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2335_35 | HRGMv2_2335_35_1 | 170 | 2980 | + | GH25 |
| pfam | HRGMv2_2335_35 | HRGMv2_2335_35_2 | 3260 | 4345 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd |
| pfam | HRGMv2_2335_35 | HRGMv2_2335_35_3 | 4444 | 5313 | + | NTP_transferase | NTP_transf_3 |
| CAZyme | HRGMv2_2335_35 | HRGMv2_2335_35_4 | 5303 | 6595 | + | GH25 |
| pfam | HRGMv2_2335_35 | HRGMv2_2335_35_5 | 6626 | 7198 | + | dTDP_sugar_isom |
| TC | HRGMv2_2335_35 | HRGMv2_2335_35_6 | 7185 | 8177 | + | 3.A.1.104.1 |
| NULL(UNKNOWN) | HRGMv2_2335_35 | HRGMv2_2335_35_7 | 8398 | 9867 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2335_35 | HRGMv2_2335_35_8 | 9874 | 11214 | + | 3.A.1.103.6 |
| pfam | HRGMv2_2335_35 | HRGMv2_2335_35_9 | 11218 | 13290 | + | PCMT | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 |
| CAZyme | HRGMv2_2335_35 | HRGMv2_2335_35_10 | 13304 | 15337 | + | GT2 |
| CAZyme | HRGMv2_2335_35 | HRGMv2_2335_35_11 | 15389 | 17455 | + | GT2 |
| pfam | HRGMv2_2335_35 | HRGMv2_2335_35_12 | 17553 | 19274 | + | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III |
| CAZyme | HRGMv2_2335_35 | HRGMv2_2335_35_13 | 19365 | 20789 | + | GT2 |
| CAZyme | HRGMv2_2335_35 | HRGMv2_2335_35_14 | 20786 | 21778 | + | GT2 |
| TC | HRGMv2_2335_35 | HRGMv2_2335_35_15 | 21922 | 23286 | + | 9.B.18.1.1 |
| pfam | HRGMv2_2335_35 | HRGMv2_2335_35_16 | 23304 | 24479 | + | LytR_cpsA_psr |
| CAZyme | HRGMv2_2335_35 | HRGMv2_2335_35_17 | 24660 | 25598 | + | GT2 |
Gene ID: HRGMv2_2335_35_1
Type: CAZyme
Location: 170 - 2980 (+)
Type: CAZyme
Location: 170 - 2980 (+)
Gene ID: HRGMv2_2335_35_2
Type: pfam
Location: 3260 - 4345 (+)
Type: pfam
Location: 3260 - 4345 (+)
Gene ID: HRGMv2_2335_35_3
Type: pfam
Location: 4444 - 5313 (+)
Type: pfam
Location: 4444 - 5313 (+)
Gene ID: HRGMv2_2335_35_4
Type: CAZyme
Location: 5303 - 6595 (+)
Type: CAZyme
Location: 5303 - 6595 (+)
Gene ID: HRGMv2_2335_35_5
Type: pfam
Location: 6626 - 7198 (+)
Type: pfam
Location: 6626 - 7198 (+)
Gene ID: HRGMv2_2335_35_6
Type: TC
Location: 7185 - 8177 (+)
Type: TC
Location: 7185 - 8177 (+)
Gene ID: HRGMv2_2335_35_7
Type:
Location: 8398 - 9867 (+)
Type:
Location: 8398 - 9867 (+)
Gene ID: HRGMv2_2335_35_8
Type: TC
Location: 9874 - 11214 (+)
Type: TC
Location: 9874 - 11214 (+)
Gene ID: HRGMv2_2335_35_9
Type: pfam
Location: 11218 - 13290 (+)
Type: pfam
Location: 11218 - 13290 (+)
Gene ID: HRGMv2_2335_35_10
Type: CAZyme
Location: 13304 - 15337 (+)
Type: CAZyme
Location: 13304 - 15337 (+)
Gene ID: HRGMv2_2335_35_11
Type: CAZyme
Location: 15389 - 17455 (+)
Type: CAZyme
Location: 15389 - 17455 (+)
Gene ID: HRGMv2_2335_35_12
Type: pfam
Location: 17553 - 19274 (+)
Type: pfam
Location: 17553 - 19274 (+)
Gene ID: HRGMv2_2335_35_13
Type: CAZyme
Location: 19365 - 20789 (+)
Type: CAZyme
Location: 19365 - 20789 (+)
Gene ID: HRGMv2_2335_35_14
Type: CAZyme
Location: 20786 - 21778 (+)
Type: CAZyme
Location: 20786 - 21778 (+)
Gene ID: HRGMv2_2335_35_15
Type: TC
Location: 21922 - 23286 (+)
Type: TC
Location: 21922 - 23286 (+)
Gene ID: HRGMv2_2335_35_16
Type: pfam
Location: 23304 - 24479 (+)
Type: pfam
Location: 23304 - 24479 (+)
Gene ID: HRGMv2_2335_35_17
Type: CAZyme
Location: 24660 - 25598 (+)
Type: CAZyme
Location: 24660 - 25598 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Species
Acetatifactor sp934436435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.