Cluster: HRGMv2_2335_CGC23
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2335
- CGC Family ID: CGCFAM_02675
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2335_28 | HRGMv2_2335_28_20 | 20639 | 22393 | + | 3.A.1.135.7 |
| TC | HRGMv2_2335_28 | HRGMv2_2335_28_21 | 22393 | 24138 | + | 3.A.1.135.5 |
| CAZyme | HRGMv2_2335_28 | HRGMv2_2335_28_22 | 24919 | 26235 | + | GH3 |
| NULL(UNKNOWN) | HRGMv2_2335_28 | HRGMv2_2335_28_23 | 26393 | 33649 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2335_28 | HRGMv2_2335_28_24 | 34198 | 35265 | - | 9.B.97.4.1 |
| STP | HRGMv2_2335_28 | HRGMv2_2335_28_25 | 35413 | 37107 | + | GGDEF |
| TC | HRGMv2_2335_28 | HRGMv2_2335_28_26 | 37133 | 38893 | + | 3.A.1.106.2 |
Gene ID: HRGMv2_2335_28_20
Type: TC
Location: 20639 - 22393 (+)
Type: TC
Location: 20639 - 22393 (+)
Gene ID: HRGMv2_2335_28_21
Type: TC
Location: 22393 - 24138 (+)
Type: TC
Location: 22393 - 24138 (+)
Gene ID: HRGMv2_2335_28_22
Type: CAZyme
Location: 24919 - 26235 (+)
Type: CAZyme
Location: 24919 - 26235 (+)
Gene ID: HRGMv2_2335_28_23
Type:
Location: 26393 - 33649 (+)
Type:
Location: 26393 - 33649 (+)
Gene ID: HRGMv2_2335_28_24
Type: TC
Location: 34198 - 35265 (-)
Type: TC
Location: 34198 - 35265 (-)
Gene ID: HRGMv2_2335_28_25
Type: STP
Location: 35413 - 37107 (+)
Type: STP
Location: 35413 - 37107 (+)
Gene ID: HRGMv2_2335_28_26
Type: TC
Location: 37133 - 38893 (+)
Type: TC
Location: 37133 - 38893 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Species
Acetatifactor sp934436435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.