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Cluster: HRGMv2_2335_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2335_24 HRGMv2_2335_24_20 21873 23972 - GH73
CAZyme HRGMv2_2335_24 HRGMv2_2335_24_21 23993 25003 - GT2
CAZyme HRGMv2_2335_24 HRGMv2_2335_24_22 24993 26261 - GT4
CAZyme HRGMv2_2335_24 HRGMv2_2335_24_23 26258 27730 - GT4
pfam HRGMv2_2335_24 HRGMv2_2335_24_24 27746 28912 - EpsG
CAZyme HRGMv2_2335_24 HRGMv2_2335_24_25 28931 29722 - GT2
NULL(UNKNOWN) HRGMv2_2335_24 HRGMv2_2335_24_26 29719 30912 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2335_24 HRGMv2_2335_24_27 30933 32384 - 9.B.18.1.3
CAZyme HRGMv2_2335_24 HRGMv2_2335_24_28 32397 33158 - GT2
Gene ID: HRGMv2_2335_24_20
Type: CAZyme
Location: 21873 - 23972 (-)
Gene ID: HRGMv2_2335_24_21
Type: CAZyme
Location: 23993 - 25003 (-)
Gene ID: HRGMv2_2335_24_22
Type: CAZyme
Location: 24993 - 26261 (-)
Gene ID: HRGMv2_2335_24_23
Type: CAZyme
Location: 26258 - 27730 (-)
Gene ID: HRGMv2_2335_24_24
Type: pfam
Location: 27746 - 28912 (-)
Gene ID: HRGMv2_2335_24_25
Type: CAZyme
Location: 28931 - 29722 (-)
Gene ID: HRGMv2_2335_24_26
Type:
Location: 29719 - 30912 (-)
Gene ID: HRGMv2_2335_24_27
Type: TC
Location: 30933 - 32384 (-)
Gene ID: HRGMv2_2335_24_28
Type: CAZyme
Location: 32397 - 33158 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2335_24_20 vegetarian > vegan 1.51484 0.00364
HRGMv2_2335_24_21 vegetarian > vegan 1.21989 0.00364
HRGMv2_2335_24_23 vegetarian > vegan 1.09622 0.00364

🧭 Explore Read Mapping of CGC

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