Cluster: HRGMv2_2335_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2335
- CGC Family ID: CGCFAM_00277
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2335_1 | HRGMv2_2335_1_90 | 108675 | 110597 | - | GH2 |
| TC | HRGMv2_2335_1 | HRGMv2_2335_1_91 | 110624 | 111457 | - | 3.A.1.1.18 |
| TC | HRGMv2_2335_1 | HRGMv2_2335_1_92 | 111479 | 112366 | - | 3.A.1.1.32 |
| STP | HRGMv2_2335_1 | HRGMv2_2335_1_93 | 112438 | 113799 | - | SBP_bac_1 |
| TF | HRGMv2_2335_1 | HRGMv2_2335_1_94 | 114016 | 116271 | - | HTH_AraC | HTH_AraC |
| TC | HRGMv2_2335_1 | HRGMv2_2335_1_95 | 116475 | 117866 | + | 2.A.25.1.9 |
Gene ID: HRGMv2_2335_1_90
Type: CAZyme
Location: 108675 - 110597 (-)
Type: CAZyme
Location: 108675 - 110597 (-)
Gene ID: HRGMv2_2335_1_91
Type: TC
Location: 110624 - 111457 (-)
Type: TC
Location: 110624 - 111457 (-)
Gene ID: HRGMv2_2335_1_92
Type: TC
Location: 111479 - 112366 (-)
Type: TC
Location: 111479 - 112366 (-)
Gene ID: HRGMv2_2335_1_93
Type: STP
Location: 112438 - 113799 (-)
Type: STP
Location: 112438 - 113799 (-)
Gene ID: HRGMv2_2335_1_94
Type: TF
Location: 114016 - 116271 (-)
Type: TF
Location: 114016 - 116271 (-)
Gene ID: HRGMv2_2335_1_95
Type: TC
Location: 116475 - 117866 (+)
Type: TC
Location: 116475 - 117866 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Species
Acetatifactor sp934436435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.