Cluster: HRGMv2_2335_CGC18
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2335
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2335_21 | HRGMv2_2335_21_6 | 3459 | 4322 | - | 8.A.5.1.4 |
| pfam | HRGMv2_2335_21 | HRGMv2_2335_21_7 | 4571 | 5491 | - | BsuBI_PstI_RE | BsuBI_PstI_RE_N |
| pfam | HRGMv2_2335_21 | HRGMv2_2335_21_8 | 5484 | 6971 | - | N6_Mtase | Eco57I |
| TC | HRGMv2_2335_21 | HRGMv2_2335_21_9 | 7270 | 8748 | + | 2.A.25.1.3 |
| pfam | HRGMv2_2335_21 | HRGMv2_2335_21_10 | 8743 | 10110 | - | MatE | MatE |
| TC | HRGMv2_2335_21 | HRGMv2_2335_21_11 | 10272 | 12008 | - | 3.A.1.21.1 |
| TC | HRGMv2_2335_21 | HRGMv2_2335_21_12 | 12010 | 13785 | - | 3.A.1.21.1 |
| STP | HRGMv2_2335_21 | HRGMv2_2335_21_13 | 13947 | 14564 | - | TetR_N |
| TC | HRGMv2_2335_21 | HRGMv2_2335_21_14 | 14635 | 16305 | - | 8.A.7.1.1 |
| STP | HRGMv2_2335_21 | HRGMv2_2335_21_15 | 16321 | 16587 | - | PTS-HPr |
| CAZyme | HRGMv2_2335_21 | HRGMv2_2335_21_16 | 16590 | 18092 | - | GH1 |
| TC | HRGMv2_2335_21 | HRGMv2_2335_21_17 | 18092 | 19384 | - | 4.A.3.2.2 |
| TC | HRGMv2_2335_21 | HRGMv2_2335_21_18 | 19437 | 19736 | - | 4.A.3.2.6 |
| TC | HRGMv2_2335_21 | HRGMv2_2335_21_19 | 19753 | 20070 | - | 4.A.3.2.1 |
| TF | HRGMv2_2335_21 | HRGMv2_2335_21_20 | 20089 | 22620 | - | 0037767 |
| TC | HRGMv2_2335_21 | HRGMv2_2335_21_21 | 22902 | 24614 | - | 3.A.1.106.1 |
| TC | HRGMv2_2335_21 | HRGMv2_2335_21_22 | 24601 | 26331 | - | 3.A.1.106.2 |
Gene ID: HRGMv2_2335_21_6
Type: TC
Location: 3459 - 4322 (-)
Type: TC
Location: 3459 - 4322 (-)
Gene ID: HRGMv2_2335_21_7
Type: pfam
Location: 4571 - 5491 (-)
Type: pfam
Location: 4571 - 5491 (-)
Gene ID: HRGMv2_2335_21_8
Type: pfam
Location: 5484 - 6971 (-)
Type: pfam
Location: 5484 - 6971 (-)
Gene ID: HRGMv2_2335_21_9
Type: TC
Location: 7270 - 8748 (+)
Type: TC
Location: 7270 - 8748 (+)
Gene ID: HRGMv2_2335_21_10
Type: pfam
Location: 8743 - 10110 (-)
Type: pfam
Location: 8743 - 10110 (-)
Gene ID: HRGMv2_2335_21_11
Type: TC
Location: 10272 - 12008 (-)
Type: TC
Location: 10272 - 12008 (-)
Gene ID: HRGMv2_2335_21_12
Type: TC
Location: 12010 - 13785 (-)
Type: TC
Location: 12010 - 13785 (-)
Gene ID: HRGMv2_2335_21_13
Type: STP
Location: 13947 - 14564 (-)
Type: STP
Location: 13947 - 14564 (-)
Gene ID: HRGMv2_2335_21_14
Type: TC
Location: 14635 - 16305 (-)
Type: TC
Location: 14635 - 16305 (-)
Gene ID: HRGMv2_2335_21_15
Type: STP
Location: 16321 - 16587 (-)
Type: STP
Location: 16321 - 16587 (-)
Gene ID: HRGMv2_2335_21_16
Type: CAZyme
Location: 16590 - 18092 (-)
Type: CAZyme
Location: 16590 - 18092 (-)
Gene ID: HRGMv2_2335_21_17
Type: TC
Location: 18092 - 19384 (-)
Type: TC
Location: 18092 - 19384 (-)
Gene ID: HRGMv2_2335_21_18
Type: TC
Location: 19437 - 19736 (-)
Type: TC
Location: 19437 - 19736 (-)
Gene ID: HRGMv2_2335_21_19
Type: TC
Location: 19753 - 20070 (-)
Type: TC
Location: 19753 - 20070 (-)
Gene ID: HRGMv2_2335_21_20
Type: TF
Location: 20089 - 22620 (-)
Type: TF
Location: 20089 - 22620 (-)
Gene ID: HRGMv2_2335_21_21
Type: TC
Location: 22902 - 24614 (-)
Type: TC
Location: 22902 - 24614 (-)
Gene ID: HRGMv2_2335_21_22
Type: TC
Location: 24601 - 26331 (-)
Type: TC
Location: 24601 - 26331 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Species
Acetatifactor sp934436435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2335_21_16 | vegetarian > vegan | 2.13026 | 0.00364 |
| HRGMv2_2335_21_18 | vegetarian > vegan | 4.54229 | 0.00364 |