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Cluster: HRGMv2_2335_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2335_17 HRGMv2_2335_17_34 35743 36825 - 2.A.86.1.9
pfam HRGMv2_2335_17 HRGMv2_2335_17_35 36872 37603 - PseudoU_synth_2
pfam HRGMv2_2335_17 HRGMv2_2335_17_36 37600 39042 - Methyltr_RsmB-F | Methyltranf_PUA | Methyltr_RsmF_N | RsmF_methylt_CI
CAZyme HRGMv2_2335_17 HRGMv2_2335_17_37 39231 40403 + GH5_2
pfam HRGMv2_2335_17 HRGMv2_2335_17_38 40419 40979 - DUF436
TC HRGMv2_2335_17 HRGMv2_2335_17_39 41059 42204 - 2.A.45.2.6
pfam HRGMv2_2335_17 HRGMv2_2335_17_40 42290 42877 + Mntp | Mntp
TC HRGMv2_2335_17 HRGMv2_2335_17_41 42972 44435 + 9.A.11.1.1
NULL(UNKNOWN) HRGMv2_2335_17 HRGMv2_2335_17_42 44905 45585 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_2335_17 HRGMv2_2335_17_43 46076 47278 - DUF3810
TC HRGMv2_2335_17 HRGMv2_2335_17_44 47287 48669 - 2.A.66.1.26
Gene ID: HRGMv2_2335_17_34
Type: TC
Location: 35743 - 36825 (-)
Gene ID: HRGMv2_2335_17_35
Type: pfam
Location: 36872 - 37603 (-)
Gene ID: HRGMv2_2335_17_36
Type: pfam
Location: 37600 - 39042 (-)
Gene ID: HRGMv2_2335_17_37
Type: CAZyme
Location: 39231 - 40403 (+)
Gene ID: HRGMv2_2335_17_38
Type: pfam
Location: 40419 - 40979 (-)
Gene ID: HRGMv2_2335_17_39
Type: TC
Location: 41059 - 42204 (-)
Gene ID: HRGMv2_2335_17_40
Type: pfam
Location: 42290 - 42877 (+)
Gene ID: HRGMv2_2335_17_41
Type: TC
Location: 42972 - 44435 (+)
Gene ID: HRGMv2_2335_17_42
Type:
Location: 44905 - 45585 (-)
Gene ID: HRGMv2_2335_17_43
Type: pfam
Location: 46076 - 47278 (-)
Gene ID: HRGMv2_2335_17_44
Type: TC
Location: 47287 - 48669 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2335_17_34 vegetarian > vegan 1.22057 0.00364

🧭 Explore Read Mapping of CGC

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