Cluster: HRGMv2_2335_CGC11
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2335
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2335_8 | HRGMv2_2335_8_30 | 35742 | 37493 | + | 1.A.11.2.7 |
| TC | HRGMv2_2335_8 | HRGMv2_2335_8_31 | 37709 | 39103 | + | 2.A.66.1.33 |
| TC | HRGMv2_2335_8 | HRGMv2_2335_8_32 | 39265 | 40254 | + | 8.A.5.1.3 |
| pfam | HRGMv2_2335_8 | HRGMv2_2335_8_33 | 40279 | 41208 | + | SBF | Mem_trans | Mem_trans |
| TC | HRGMv2_2335_8 | HRGMv2_2335_8_34 | 41309 | 43096 | - | 1.B.52.2.1 |
| pfam | HRGMv2_2335_8 | HRGMv2_2335_8_35 | 43299 | 44105 | + | Polysacc_deac_1 |
| TF | HRGMv2_2335_8 | HRGMv2_2335_8_36 | 44095 | 45132 | - | LacI |
| TC | HRGMv2_2335_8 | HRGMv2_2335_8_37 | 45318 | 46574 | + | 3.A.1.1.16 |
| TC | HRGMv2_2335_8 | HRGMv2_2335_8_38 | 46614 | 47504 | + | 3.A.1.1.2 |
| TC | HRGMv2_2335_8 | HRGMv2_2335_8_39 | 47512 | 48357 | + | 3.A.1.1.27 |
| CAZyme | HRGMv2_2335_8 | HRGMv2_2335_8_40 | 48373 | 50097 | + | CBM34 | GH13_20 |
Gene ID: HRGMv2_2335_8_30
Type: TC
Location: 35742 - 37493 (+)
Type: TC
Location: 35742 - 37493 (+)
Gene ID: HRGMv2_2335_8_31
Type: TC
Location: 37709 - 39103 (+)
Type: TC
Location: 37709 - 39103 (+)
Gene ID: HRGMv2_2335_8_32
Type: TC
Location: 39265 - 40254 (+)
Type: TC
Location: 39265 - 40254 (+)
Gene ID: HRGMv2_2335_8_33
Type: pfam
Location: 40279 - 41208 (+)
Type: pfam
Location: 40279 - 41208 (+)
Gene ID: HRGMv2_2335_8_34
Type: TC
Location: 41309 - 43096 (-)
Type: TC
Location: 41309 - 43096 (-)
Gene ID: HRGMv2_2335_8_35
Type: pfam
Location: 43299 - 44105 (+)
Type: pfam
Location: 43299 - 44105 (+)
Gene ID: HRGMv2_2335_8_36
Type: TF
Location: 44095 - 45132 (-)
Type: TF
Location: 44095 - 45132 (-)
Gene ID: HRGMv2_2335_8_37
Type: TC
Location: 45318 - 46574 (+)
Type: TC
Location: 45318 - 46574 (+)
Gene ID: HRGMv2_2335_8_38
Type: TC
Location: 46614 - 47504 (+)
Type: TC
Location: 46614 - 47504 (+)
Gene ID: HRGMv2_2335_8_39
Type: TC
Location: 47512 - 48357 (+)
Type: TC
Location: 47512 - 48357 (+)
Gene ID: HRGMv2_2335_8_40
Type: CAZyme
Location: 48373 - 50097 (+)
Type: CAZyme
Location: 48373 - 50097 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Species
Acetatifactor sp934436435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2335_8_37 | vegan > omnivore | 1.06760 | 0.03508 |
| HRGMv2_2335_8_37 | vegetarian > omnivore | 1.02680 | 0.00878 |
| HRGMv2_2335_8_38 | vegan > omnivore | 1.10670 | 0.04643 |
| HRGMv2_2335_8_38 | vegetarian > omnivore | 1.01443 | 0.00878 |