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Cluster: HRGMv2_2335_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2335_8 HRGMv2_2335_8_3 2725 5130 + GH94
pfam HRGMv2_2335_8 HRGMv2_2335_8_4 5191 6606 + PGM_PMM_IV | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III
TC HRGMv2_2335_8 HRGMv2_2335_8_5 6862 8637 + 8.A.59.2.1
STP HRGMv2_2335_8 HRGMv2_2335_8_6 8747 10126 + SBP_bac_1
TC HRGMv2_2335_8 HRGMv2_2335_8_7 10205 11092 + 3.A.1.1.23
TC HRGMv2_2335_8 HRGMv2_2335_8_8 11104 11958 + 3.A.1.1.34
TF HRGMv2_2335_8 HRGMv2_2335_8_9 12004 12861 + HTH_AraC
sulfatase HRGMv2_2335_8 HRGMv2_2335_8_10 12926 13642 + S1_9
CAZyme HRGMv2_2335_8 HRGMv2_2335_8_11 13661 14791 + CE9
TC HRGMv2_2335_8 HRGMv2_2335_8_12 15018 17237 + 3.A.16.1.2
STP HRGMv2_2335_8 HRGMv2_2335_8_13 17421 17825 + ACT
TF HRGMv2_2335_8 HRGMv2_2335_8_14 18136 19167 + LacI
CAZyme HRGMv2_2335_8 HRGMv2_2335_8_15 19164 20966 + GH13_20
STP HRGMv2_2335_8 HRGMv2_2335_8_16 20980 22317 + SBP_bac_1
TC HRGMv2_2335_8 HRGMv2_2335_8_17 22409 23290 + 3.A.1.1.23
TC HRGMv2_2335_8 HRGMv2_2335_8_18 23308 24147 + 3.A.1.1.44
Gene ID: HRGMv2_2335_8_3
Type: CAZyme
Location: 2725 - 5130 (+)
Gene ID: HRGMv2_2335_8_4
Type: pfam
Location: 5191 - 6606 (+)
Gene ID: HRGMv2_2335_8_5
Type: TC
Location: 6862 - 8637 (+)
Gene ID: HRGMv2_2335_8_6
Type: STP
Location: 8747 - 10126 (+)
Gene ID: HRGMv2_2335_8_7
Type: TC
Location: 10205 - 11092 (+)
Gene ID: HRGMv2_2335_8_8
Type: TC
Location: 11104 - 11958 (+)
Gene ID: HRGMv2_2335_8_9
Type: TF
Location: 12004 - 12861 (+)
Gene ID: HRGMv2_2335_8_10
Type: sulfatase
Location: 12926 - 13642 (+)
Gene ID: HRGMv2_2335_8_11
Type: CAZyme
Location: 13661 - 14791 (+)
Gene ID: HRGMv2_2335_8_12
Type: TC
Location: 15018 - 17237 (+)
Gene ID: HRGMv2_2335_8_13
Type: STP
Location: 17421 - 17825 (+)
Gene ID: HRGMv2_2335_8_14
Type: TF
Location: 18136 - 19167 (+)
Gene ID: HRGMv2_2335_8_15
Type: CAZyme
Location: 19164 - 20966 (+)
Gene ID: HRGMv2_2335_8_16
Type: STP
Location: 20980 - 22317 (+)
Gene ID: HRGMv2_2335_8_17
Type: TC
Location: 22409 - 23290 (+)
Gene ID: HRGMv2_2335_8_18
Type: TC
Location: 23308 - 24147 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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