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Cluster: HRGMv2_2331_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2331_20 HRGMv2_2331_20_9 7271 8443 + 2.A.39.1.3
TF HRGMv2_2331_20 HRGMv2_2331_20_10 8568 9563 - LacI
STP HRGMv2_2331_20 HRGMv2_2331_20_11 9826 11064 + SBP_bac_1
TC HRGMv2_2331_20 HRGMv2_2331_20_12 11077 12456 + 3.A.1.1.27
TC HRGMv2_2331_20 HRGMv2_2331_20_13 12459 13328 + 3.A.1.1.27
CAZyme HRGMv2_2331_20 HRGMv2_2331_20_14 13331 15274 + GH13_14
CAZyme HRGMv2_2331_20 HRGMv2_2331_20_15 15274 17028 + CBM34 | GH13_20
CAZyme HRGMv2_2331_20 HRGMv2_2331_20_16 17050 18540 + GT35
CAZyme HRGMv2_2331_20 HRGMv2_2331_20_17 18553 19308 + GT35
CAZyme HRGMv2_2331_20 HRGMv2_2331_20_18 19319 20785 + GH77
Gene ID: HRGMv2_2331_20_9
Type: TC
Location: 7271 - 8443 (+)
Gene ID: HRGMv2_2331_20_10
Type: TF
Location: 8568 - 9563 (-)
Gene ID: HRGMv2_2331_20_11
Type: STP
Location: 9826 - 11064 (+)
Gene ID: HRGMv2_2331_20_12
Type: TC
Location: 11077 - 12456 (+)
Gene ID: HRGMv2_2331_20_13
Type: TC
Location: 12459 - 13328 (+)
Gene ID: HRGMv2_2331_20_14
Type: CAZyme
Location: 13331 - 15274 (+)
Gene ID: HRGMv2_2331_20_15
Type: CAZyme
Location: 15274 - 17028 (+)
Gene ID: HRGMv2_2331_20_16
Type: CAZyme
Location: 17050 - 18540 (+)
Gene ID: HRGMv2_2331_20_17
Type: CAZyme
Location: 18553 - 19308 (+)
Gene ID: HRGMv2_2331_20_18
Type: CAZyme
Location: 19319 - 20785 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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