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Cluster: HRGMv2_2331_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2331_3 HRGMv2_2331_3_76 89144 90202 + GT28
TC HRGMv2_2331_3 HRGMv2_2331_3_77 90545 91873 + 3.A.1.1.4
TC HRGMv2_2331_3 HRGMv2_2331_3_78 91943 92833 + 3.A.1.1.4
TC HRGMv2_2331_3 HRGMv2_2331_3_79 92826 93632 + 3.A.1.1.4
CAZyme HRGMv2_2331_3 HRGMv2_2331_3_80 93720 96875 + GH2
pfam HRGMv2_2331_3 HRGMv2_2331_3_81 96969 97946 - Choline_bind_1 | Choline_bind_1 | Choline_bind_2 | Choline_bind_3
STP HRGMv2_2331_3 HRGMv2_2331_3_82 98121 99677 - HD
TC HRGMv2_2331_3 HRGMv2_2331_3_83 99838 102507 - 3.A.3.2.22
Gene ID: HRGMv2_2331_3_76
Type: CAZyme
Location: 89144 - 90202 (+)
Gene ID: HRGMv2_2331_3_77
Type: TC
Location: 90545 - 91873 (+)
Gene ID: HRGMv2_2331_3_78
Type: TC
Location: 91943 - 92833 (+)
Gene ID: HRGMv2_2331_3_79
Type: TC
Location: 92826 - 93632 (+)
Gene ID: HRGMv2_2331_3_80
Type: CAZyme
Location: 93720 - 96875 (+)
Gene ID: HRGMv2_2331_3_81
Type: pfam
Location: 96969 - 97946 (-)
Gene ID: HRGMv2_2331_3_82
Type: STP
Location: 98121 - 99677 (-)
Gene ID: HRGMv2_2331_3_83
Type: TC
Location: 99838 - 102507 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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