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Cluster: HRGMv2_2330_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2330_9 HRGMv2_2330_9_14 15671 17056 + 2.A.66.1.28
TF HRGMv2_2330_9 HRGMv2_2330_9_15 17140 17688 + SpoVT_AbrB
CAZyme HRGMv2_2330_9 HRGMv2_2330_9_16 17794 20145 + GT51
STP HRGMv2_2330_9 HRGMv2_2330_9_17 20277 21215 + Glucokinase
pfam HRGMv2_2330_9 HRGMv2_2330_9_18 21304 22893 - Glug
TC HRGMv2_2330_9 HRGMv2_2330_9_19 23135 23368 + 3.D.1.6.4
Gene ID: HRGMv2_2330_9_14
Type: TC
Location: 15671 - 17056 (+)
Gene ID: HRGMv2_2330_9_15
Type: TF
Location: 17140 - 17688 (+)
Gene ID: HRGMv2_2330_9_16
Type: CAZyme
Location: 17794 - 20145 (+)
Gene ID: HRGMv2_2330_9_17
Type: STP
Location: 20277 - 21215 (+)
Gene ID: HRGMv2_2330_9_18
Type: pfam
Location: 21304 - 22893 (-)
Gene ID: HRGMv2_2330_9_19
Type: TC
Location: 23135 - 23368 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2330_9_19 vegan > omnivore 1.17372 0.00343

🧭 Explore Read Mapping of CGC

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