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Cluster: HRGMv2_2330_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2330_1 HRGMv2_2330_1_96 108537 110009 - GH32
NULL(UNKNOWN) HRGMv2_2330_1 HRGMv2_2330_1_97 110020 111699 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2330_1 HRGMv2_2330_1_98 111721 112617 - 3.A.1.1.29
TC HRGMv2_2330_1 HRGMv2_2330_1_99 112630 113568 - 3.A.1.1.10
TF HRGMv2_2330_1 HRGMv2_2330_1_100 113815 114840 + LacI
pfam HRGMv2_2330_1 HRGMv2_2330_1_101 115199 115651 - ArsC
TC HRGMv2_2330_1 HRGMv2_2330_1_102 115657 117000 - 2.A.66.1.13
TC HRGMv2_2330_1 HRGMv2_2330_1_103 117026 118363 - 2.A.66.1.37
Gene ID: HRGMv2_2330_1_96
Type: CAZyme
Location: 108537 - 110009 (-)
Gene ID: HRGMv2_2330_1_97
Type:
Location: 110020 - 111699 (-)
Gene ID: HRGMv2_2330_1_98
Type: TC
Location: 111721 - 112617 (-)
Gene ID: HRGMv2_2330_1_99
Type: TC
Location: 112630 - 113568 (-)
Gene ID: HRGMv2_2330_1_100
Type: TF
Location: 113815 - 114840 (+)
Gene ID: HRGMv2_2330_1_101
Type: pfam
Location: 115199 - 115651 (-)
Gene ID: HRGMv2_2330_1_102
Type: TC
Location: 115657 - 117000 (-)
Gene ID: HRGMv2_2330_1_103
Type: TC
Location: 117026 - 118363 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2330_1_97 vegan > omnivore 1.22888 0.00343
HRGMv2_2330_1_101 vegetarian > vegan 1.07350 0.00110

🧭 Explore Read Mapping of CGC

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