Cluster: HRGMv2_2330_CGC31
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2330
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2330_83 | HRGMv2_2330_83_1 | 72 | 1454 | - | 2.A.66.1.32 |
| pfam | HRGMv2_2330_83 | HRGMv2_2330_83_2 | 1681 | 1998 | - | DUF1540 | DUF1540 |
| TC | HRGMv2_2330_83 | HRGMv2_2330_83_3 | 2391 | 3749 | - | 2.A.40.7.6 |
| pfam | HRGMv2_2330_83 | HRGMv2_2330_83_4 | 3835 | 5802 | - | tRNA-synt_2b | TGS | HGTP_anticodon | tRNA_SAD |
| pfam | HRGMv2_2330_83 | HRGMv2_2330_83_5 | 6207 | 6707 | - | SEC-C |
| CAZyme | HRGMv2_2330_83 | HRGMv2_2330_83_6 | 6899 | 8995 | - | GH13_39 |
Gene ID: HRGMv2_2330_83_1
Type: TC
Location: 72 - 1454 (-)
Type: TC
Location: 72 - 1454 (-)
Gene ID: HRGMv2_2330_83_2
Type: pfam
Location: 1681 - 1998 (-)
Type: pfam
Location: 1681 - 1998 (-)
Gene ID: HRGMv2_2330_83_3
Type: TC
Location: 2391 - 3749 (-)
Type: TC
Location: 2391 - 3749 (-)
Gene ID: HRGMv2_2330_83_4
Type: pfam
Location: 3835 - 5802 (-)
Type: pfam
Location: 3835 - 5802 (-)
Gene ID: HRGMv2_2330_83_5
Type: pfam
Location: 6207 - 6707 (-)
Type: pfam
Location: 6207 - 6707 (-)
Gene ID: HRGMv2_2330_83_6
Type: CAZyme
Location: 6899 - 8995 (-)
Type: CAZyme
Location: 6899 - 8995 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter sp934316545
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2330_83_3 | vegan > omnivore | 1.45709 | 0.00343 |