Cluster: HRGMv2_2330_CGC29
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2330
- CGC Family ID: CGCFAM_00334
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2330_69 | HRGMv2_2330_69_2 | 456 | 3068 | + | 3.A.3.5.15 |
| CAZyme | HRGMv2_2330_69 | HRGMv2_2330_69_3 | 3207 | 4217 | + | GH5_2 |
| TF | HRGMv2_2330_69 | HRGMv2_2330_69_4 | 4283 | 5149 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_2330_69 | HRGMv2_2330_69_5 | 5329 | 8367 | + | GH2 |
| TC | HRGMv2_2330_69 | HRGMv2_2330_69_6 | 8420 | 9823 | + | 2.A.2.3.3 |
Gene ID: HRGMv2_2330_69_2
Type: TC
Location: 456 - 3068 (+)
Type: TC
Location: 456 - 3068 (+)
Gene ID: HRGMv2_2330_69_3
Type: CAZyme
Location: 3207 - 4217 (+)
Type: CAZyme
Location: 3207 - 4217 (+)
Gene ID: HRGMv2_2330_69_4
Type: TF
Location: 4283 - 5149 (-)
Type: TF
Location: 4283 - 5149 (-)
Gene ID: HRGMv2_2330_69_5
Type: CAZyme
Location: 5329 - 8367 (+)
Type: CAZyme
Location: 5329 - 8367 (+)
Gene ID: HRGMv2_2330_69_6
Type: TC
Location: 8420 - 9823 (+)
Type: TC
Location: 8420 - 9823 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter sp934316545
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.