Cluster: HRGMv2_2330_CGC27
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2330
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2330_57 | HRGMv2_2330_57_1 | 167 | 796 | - | 2.A.115.2.3 |
| CAZyme | HRGMv2_2330_57 | HRGMv2_2330_57_2 | 800 | 3043 | - | GH36 |
| TC | HRGMv2_2330_57 | HRGMv2_2330_57_3 | 3077 | 4495 | - | 2.A.2.1.1 |
Gene ID: HRGMv2_2330_57_1
Type: TC
Location: 167 - 796 (-)
Type: TC
Location: 167 - 796 (-)
Gene ID: HRGMv2_2330_57_2
Type: CAZyme
Location: 800 - 3043 (-)
Type: CAZyme
Location: 800 - 3043 (-)
Gene ID: HRGMv2_2330_57_3
Type: TC
Location: 3077 - 4495 (-)
Type: TC
Location: 3077 - 4495 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter sp934316545
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2330_57_1 | vegan > omnivore | 1.33173 | 0.00343 |
| HRGMv2_2330_57_2 | vegan > omnivore | 1.59654 | 0.00343 |
| HRGMv2_2330_57_2 | vegetarian > omnivore | 1.03738 | 0.00933 |
| HRGMv2_2330_57_3 | vegan > omnivore | 2.96631 | 0.00343 |
| HRGMv2_2330_57_3 | vegetarian > omnivore | 1.89104 | 0.00933 |