Cluster: HRGMv2_2330_CGC25
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2330
- CGC Family ID: CGCFAM_00500
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2330_38 | HRGMv2_2330_38_13 | 12280 | 14481 | + | GH25 |
| pfam | HRGMv2_2330_38 | HRGMv2_2330_38_14 | 14512 | 15837 | + | Amidase_3 |
| pfam | HRGMv2_2330_38 | HRGMv2_2330_38_15 | 16220 | 16945 | + | Glyco_tran_WecG |
| TC | HRGMv2_2330_38 | HRGMv2_2330_38_16 | 16938 | 17825 | + | 2.A.115.1.5 |
| pfam | HRGMv2_2330_38 | HRGMv2_2330_38_17 | 17995 | 19083 | + | HTH_30 | GGDEF_2 |
| TC | HRGMv2_2330_38 | HRGMv2_2330_38_18 | 19097 | 19783 | + | 3.A.1.140.1 |
Gene ID: HRGMv2_2330_38_13
Type: CAZyme
Location: 12280 - 14481 (+)
Type: CAZyme
Location: 12280 - 14481 (+)
Gene ID: HRGMv2_2330_38_14
Type: pfam
Location: 14512 - 15837 (+)
Type: pfam
Location: 14512 - 15837 (+)
Gene ID: HRGMv2_2330_38_15
Type: pfam
Location: 16220 - 16945 (+)
Type: pfam
Location: 16220 - 16945 (+)
Gene ID: HRGMv2_2330_38_16
Type: TC
Location: 16938 - 17825 (+)
Type: TC
Location: 16938 - 17825 (+)
Gene ID: HRGMv2_2330_38_17
Type: pfam
Location: 17995 - 19083 (+)
Type: pfam
Location: 17995 - 19083 (+)
Gene ID: HRGMv2_2330_38_18
Type: TC
Location: 19097 - 19783 (+)
Type: TC
Location: 19097 - 19783 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter sp934316545
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.