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Cluster: HRGMv2_2330_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2330_31 HRGMv2_2330_31_11 11030 12427 + 2.A.40.2.1
TC HRGMv2_2330_31 HRGMv2_2330_31_12 12594 14708 - 1.B.52.2.1
TC HRGMv2_2330_31 HRGMv2_2330_31_13 14980 16518 + 3.A.1.3.20
TC HRGMv2_2330_31 HRGMv2_2330_31_14 16508 17248 + 3.A.1.3.25
TF HRGMv2_2330_31 HRGMv2_2330_31_15 17383 17859 + MarR
TC HRGMv2_2330_31 HRGMv2_2330_31_16 17843 20164 + 3.A.1.135.6
TC HRGMv2_2330_31 HRGMv2_2330_31_17 20157 22004 + 3.A.1.135.6
NULL(UNKNOWN) HRGMv2_2330_31 HRGMv2_2330_31_18 22004 22147 + NULL(UNKNOWN)
[View Structural Homologs]
STP HRGMv2_2330_31 HRGMv2_2330_31_19 22188 22979 + Response_reg | Spo0A_C
CAZyme HRGMv2_2330_31 HRGMv2_2330_31_20 23015 24466 + GT5
pfam HRGMv2_2330_31 HRGMv2_2330_31_21 24553 25446 - DUF5688
TC HRGMv2_2330_31 HRGMv2_2330_31_22 25586 26659 - 3.A.1.11.7
TC HRGMv2_2330_31 HRGMv2_2330_31_23 26707 27489 - 3.A.1.11.7
TC HRGMv2_2330_31 HRGMv2_2330_31_24 27483 28307 - 3.A.1.11.1
TC HRGMv2_2330_31 HRGMv2_2330_31_25 28300 29382 - 3.A.1.11.8
Gene ID: HRGMv2_2330_31_11
Type: TC
Location: 11030 - 12427 (+)
Gene ID: HRGMv2_2330_31_12
Type: TC
Location: 12594 - 14708 (-)
Gene ID: HRGMv2_2330_31_13
Type: TC
Location: 14980 - 16518 (+)
Gene ID: HRGMv2_2330_31_14
Type: TC
Location: 16508 - 17248 (+)
Gene ID: HRGMv2_2330_31_15
Type: TF
Location: 17383 - 17859 (+)
Gene ID: HRGMv2_2330_31_16
Type: TC
Location: 17843 - 20164 (+)
Gene ID: HRGMv2_2330_31_17
Type: TC
Location: 20157 - 22004 (+)
Gene ID: HRGMv2_2330_31_18
Type:
Location: 22004 - 22147 (+)
Gene ID: HRGMv2_2330_31_19
Type: STP
Location: 22188 - 22979 (+)
Gene ID: HRGMv2_2330_31_20
Type: CAZyme
Location: 23015 - 24466 (+)
Gene ID: HRGMv2_2330_31_21
Type: pfam
Location: 24553 - 25446 (-)
Gene ID: HRGMv2_2330_31_22
Type: TC
Location: 25586 - 26659 (-)
Gene ID: HRGMv2_2330_31_23
Type: TC
Location: 26707 - 27489 (-)
Gene ID: HRGMv2_2330_31_24
Type: TC
Location: 27483 - 28307 (-)
Gene ID: HRGMv2_2330_31_25
Type: TC
Location: 28300 - 29382 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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