Cluster: HRGMv2_2330_CGC21
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2330
- CGC Family ID: CGCFAM_04659
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2330_30 | HRGMv2_2330_30_9 | 7946 | 9103 | - | CE4 |
| pfam | HRGMv2_2330_30 | HRGMv2_2330_30_10 | 9274 | 10125 | + | DUF11 |
| pfam | HRGMv2_2330_30 | HRGMv2_2330_30_11 | 10189 | 10797 | - | Peptidase_C39_2 |
| TC | HRGMv2_2330_30 | HRGMv2_2330_30_12 | 10930 | 12459 | - | 2.A.35.2.1 |
| TC | HRGMv2_2330_30 | HRGMv2_2330_30_13 | 12670 | 15243 | - | 3.A.5.1.3 |
Gene ID: HRGMv2_2330_30_9
Type: CAZyme
Location: 7946 - 9103 (-)
Type: CAZyme
Location: 7946 - 9103 (-)
Gene ID: HRGMv2_2330_30_10
Type: pfam
Location: 9274 - 10125 (+)
Type: pfam
Location: 9274 - 10125 (+)
Gene ID: HRGMv2_2330_30_11
Type: pfam
Location: 10189 - 10797 (-)
Type: pfam
Location: 10189 - 10797 (-)
Gene ID: HRGMv2_2330_30_12
Type: TC
Location: 10930 - 12459 (-)
Type: TC
Location: 10930 - 12459 (-)
Gene ID: HRGMv2_2330_30_13
Type: TC
Location: 12670 - 15243 (-)
Type: TC
Location: 12670 - 15243 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter sp934316545
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2330_30_12 | vegan > omnivore | 1.09416 | 0.00343 |