Cluster: HRGMv2_2330_CGC20
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2330
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2330_27 | HRGMv2_2330_27_20 | 20175 | 21665 | - | GH13_18 |
| CAZyme | HRGMv2_2330_27 | HRGMv2_2330_27_21 | 21655 | 24465 | - | GH36 |
| TC | HRGMv2_2330_27 | HRGMv2_2330_27_22 | 24484 | 25323 | - | 3.A.1.1.28 |
| TC | HRGMv2_2330_27 | HRGMv2_2330_27_23 | 25323 | 26198 | - | 3.A.1.1.45 |
| TC | HRGMv2_2330_27 | HRGMv2_2330_27_24 | 26195 | 27496 | - | 3.A.1.1.28 |
Gene ID: HRGMv2_2330_27_20
Type: CAZyme
Location: 20175 - 21665 (-)
Type: CAZyme
Location: 20175 - 21665 (-)
Gene ID: HRGMv2_2330_27_21
Type: CAZyme
Location: 21655 - 24465 (-)
Type: CAZyme
Location: 21655 - 24465 (-)
Gene ID: HRGMv2_2330_27_22
Type: TC
Location: 24484 - 25323 (-)
Type: TC
Location: 24484 - 25323 (-)
Gene ID: HRGMv2_2330_27_23
Type: TC
Location: 25323 - 26198 (-)
Type: TC
Location: 25323 - 26198 (-)
Gene ID: HRGMv2_2330_27_24
Type: TC
Location: 26195 - 27496 (-)
Type: TC
Location: 26195 - 27496 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter sp934316545
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.