Cluster: HRGMv2_2330_CGC2
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2330
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2330_1 | HRGMv2_2330_1_55 | 63143 | 64876 | - | 1.B.52.2.1 |
| CAZyme | HRGMv2_2330_1 | HRGMv2_2330_1_56 | 64908 | 66383 | - | GH78 |
| CAZyme | HRGMv2_2330_1 | HRGMv2_2330_1_57 | 66396 | 68081 | - | GH3 |
Gene ID: HRGMv2_2330_1_55
Type: TC
Location: 63143 - 64876 (-)
Type: TC
Location: 63143 - 64876 (-)
Gene ID: HRGMv2_2330_1_56
Type: CAZyme
Location: 64908 - 66383 (-)
Type: CAZyme
Location: 64908 - 66383 (-)
Gene ID: HRGMv2_2330_1_57
Type: CAZyme
Location: 66396 - 68081 (-)
Type: CAZyme
Location: 66396 - 68081 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter sp934316545
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2330_1_56 | vegan > omnivore | 1.41743 | 0.00343 |
| HRGMv2_2330_1_57 | vegan > omnivore | 2.13984 | 0.00343 |