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Cluster: HRGMv2_2330_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2330_19 HRGMv2_2330_19_12 13076 14500 + GT4
pfam HRGMv2_2330_19 HRGMv2_2330_19_13 14516 15988 + PelG
pfam HRGMv2_2330_19 HRGMv2_2330_19_14 15982 16356 + DUF2304
CAZyme HRGMv2_2330_19 HRGMv2_2330_19_15 16328 17557 + GT4
CAZyme HRGMv2_2330_19 HRGMv2_2330_19_16 17566 18363 + GT2
pfam HRGMv2_2330_19 HRGMv2_2330_19_17 18341 19579 + DUF4832 | DUF4874
TC HRGMv2_2330_19 HRGMv2_2330_19_18 19628 21175 + 2.A.66.1.40
CAZyme HRGMv2_2330_19 HRGMv2_2330_19_19 21211 22281 + GT2
CAZyme HRGMv2_2330_19 HRGMv2_2330_19_20 22283 23281 + GT2
Gene ID: HRGMv2_2330_19_12
Type: CAZyme
Location: 13076 - 14500 (+)
Gene ID: HRGMv2_2330_19_13
Type: pfam
Location: 14516 - 15988 (+)
Gene ID: HRGMv2_2330_19_14
Type: pfam
Location: 15982 - 16356 (+)
Gene ID: HRGMv2_2330_19_15
Type: CAZyme
Location: 16328 - 17557 (+)
Gene ID: HRGMv2_2330_19_16
Type: CAZyme
Location: 17566 - 18363 (+)
Gene ID: HRGMv2_2330_19_17
Type: pfam
Location: 18341 - 19579 (+)
Gene ID: HRGMv2_2330_19_18
Type: TC
Location: 19628 - 21175 (+)
Gene ID: HRGMv2_2330_19_19
Type: CAZyme
Location: 21211 - 22281 (+)
Gene ID: HRGMv2_2330_19_20
Type: CAZyme
Location: 22283 - 23281 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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