Cluster: HRGMv2_2330_CGC16
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2330
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2330_19 | HRGMv2_2330_19_1 | 59 | 2212 | + | GH112 |
| TC | HRGMv2_2330_19 | HRGMv2_2330_19_2 | 2293 | 3630 | + | 3.A.1.1.4 |
| TC | HRGMv2_2330_19 | HRGMv2_2330_19_3 | 3704 | 4582 | + | 3.A.1.1.4 |
| TC | HRGMv2_2330_19 | HRGMv2_2330_19_4 | 4575 | 5381 | + | 3.A.1.1.4 |
| NULL(UNKNOWN) | HRGMv2_2330_19 | HRGMv2_2330_19_5 | 5381 | 5842 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2330_19 | HRGMv2_2330_19_6 | 5793 | 7103 | + | GH136 |
Gene ID: HRGMv2_2330_19_1
Type: CAZyme
Location: 59 - 2212 (+)
Type: CAZyme
Location: 59 - 2212 (+)
Gene ID: HRGMv2_2330_19_2
Type: TC
Location: 2293 - 3630 (+)
Type: TC
Location: 2293 - 3630 (+)
Gene ID: HRGMv2_2330_19_3
Type: TC
Location: 3704 - 4582 (+)
Type: TC
Location: 3704 - 4582 (+)
Gene ID: HRGMv2_2330_19_4
Type: TC
Location: 4575 - 5381 (+)
Type: TC
Location: 4575 - 5381 (+)
Gene ID: HRGMv2_2330_19_5
Type:
Location: 5381 - 5842 (+)
Type:
Location: 5381 - 5842 (+)
Gene ID: HRGMv2_2330_19_6
Type: CAZyme
Location: 5793 - 7103 (+)
Type: CAZyme
Location: 5793 - 7103 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter sp934316545
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2330_19_1 | vegetarian > vegan | 1.34320 | 0.00110 |
| HRGMv2_2330_19_2 | vegetarian > vegan | 1.07003 | 0.00110 |
| HRGMv2_2330_19_3 | vegetarian > vegan | 1.27857 | 0.00110 |
| HRGMv2_2330_19_4 | vegetarian > vegan | 1.02756 | 0.00110 |
| HRGMv2_2330_19_6 | vegetarian > vegan | 1.18515 | 0.00110 |