Cluster: HRGMv2_2330_CGC13
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2330
- CGC Family ID: CGCFAM_00864
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2330_14 | HRGMv2_2330_14_34 | 34966 | 37362 | - | GH3 |
| NULL(UNKNOWN) | HRGMv2_2330_14 | HRGMv2_2330_14_35 | 37331 | 37477 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2330_14 | HRGMv2_2330_14_36 | 37550 | 38671 | - | Exo_endo_phos |
| TC | HRGMv2_2330_14 | HRGMv2_2330_14_37 | 38631 | 39404 | - | 3.A.1.34.1 |
| TC | HRGMv2_2330_14 | HRGMv2_2330_14_38 | 39405 | 40286 | - | 3.A.1.34.1 |
| TC | HRGMv2_2330_14 | HRGMv2_2330_14_39 | 40491 | 41528 | - | 3.A.1.34.1 |
Gene ID: HRGMv2_2330_14_34
Type: CAZyme
Location: 34966 - 37362 (-)
Type: CAZyme
Location: 34966 - 37362 (-)
Gene ID: HRGMv2_2330_14_35
Type:
Location: 37331 - 37477 (-)
Type:
Location: 37331 - 37477 (-)
Gene ID: HRGMv2_2330_14_36
Type: pfam
Location: 37550 - 38671 (-)
Type: pfam
Location: 37550 - 38671 (-)
Gene ID: HRGMv2_2330_14_37
Type: TC
Location: 38631 - 39404 (-)
Type: TC
Location: 38631 - 39404 (-)
Gene ID: HRGMv2_2330_14_38
Type: TC
Location: 39405 - 40286 (-)
Type: TC
Location: 39405 - 40286 (-)
Gene ID: HRGMv2_2330_14_39
Type: TC
Location: 40491 - 41528 (-)
Type: TC
Location: 40491 - 41528 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter sp934316545
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2330_14_37 | vegan > omnivore | 1.11754 | 0.00343 |