Cluster: HRGMv2_2330_CGC11
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2330
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2330_12 | HRGMv2_2330_12_6 | 6799 | 7914 | - | GH53 |
| NULL(UNKNOWN) | HRGMv2_2330_12 | HRGMv2_2330_12_7 | 7971 | 8189 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_2330_12 | HRGMv2_2330_12_8 | 8162 | 10012 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2330_12 | HRGMv2_2330_12_9 | 10045 | 10890 | - | 3.A.1.1.27 |
| TC | HRGMv2_2330_12 | HRGMv2_2330_12_10 | 10890 | 12311 | - | 3.A.1.1.27 |
| pfam | HRGMv2_2330_12 | HRGMv2_2330_12_11 | 12440 | 13735 | - | SBP_bac_8 |
| CAZyme | HRGMv2_2330_12 | HRGMv2_2330_12_12 | 14021 | 16024 | - | CBM61 | GH53 |
| TF | HRGMv2_2330_12 | HRGMv2_2330_12_13 | 16292 | 17356 | - | LacI |
| CAZyme | HRGMv2_2330_12 | HRGMv2_2330_12_14 | 17630 | 19630 | + | GH42 |
Gene ID: HRGMv2_2330_12_6
Type: CAZyme
Location: 6799 - 7914 (-)
Type: CAZyme
Location: 6799 - 7914 (-)
Gene ID: HRGMv2_2330_12_7
Type:
Location: 7971 - 8189 (-)
Type:
Location: 7971 - 8189 (-)
Gene ID: HRGMv2_2330_12_8
Type:
Location: 8162 - 10012 (-)
Type:
Location: 8162 - 10012 (-)
Gene ID: HRGMv2_2330_12_9
Type: TC
Location: 10045 - 10890 (-)
Type: TC
Location: 10045 - 10890 (-)
Gene ID: HRGMv2_2330_12_10
Type: TC
Location: 10890 - 12311 (-)
Type: TC
Location: 10890 - 12311 (-)
Gene ID: HRGMv2_2330_12_11
Type: pfam
Location: 12440 - 13735 (-)
Type: pfam
Location: 12440 - 13735 (-)
Gene ID: HRGMv2_2330_12_12
Type: CAZyme
Location: 14021 - 16024 (-)
Type: CAZyme
Location: 14021 - 16024 (-)
Gene ID: HRGMv2_2330_12_13
Type: TF
Location: 16292 - 17356 (-)
Type: TF
Location: 16292 - 17356 (-)
Gene ID: HRGMv2_2330_12_14
Type: CAZyme
Location: 17630 - 19630 (+)
Type: CAZyme
Location: 17630 - 19630 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Agathobacter
Species
Agathobacter sp934316545
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2330_12_6 | vegan > omnivore | 1.11739 | 0.00343 |
| HRGMv2_2330_12_6 | vegetarian > omnivore | 2.30032 | 0.00933 |
| HRGMv2_2330_12_6 | vegetarian > vegan | 1.18293 | 0.00110 |
| HRGMv2_2330_12_7 | vegetarian > omnivore | 1.31466 | 0.00933 |
| HRGMv2_2330_12_7 | vegetarian > vegan | 1.21903 | 0.00110 |
| HRGMv2_2330_12_8 | vegetarian > vegan | 1.19712 | 0.00110 |
| HRGMv2_2330_12_10 | vegetarian > omnivore | 2.05698 | 0.00933 |
| HRGMv2_2330_12_10 | vegetarian > vegan | 1.32058 | 0.00110 |