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Cluster: HRGMv2_2320_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2320_4 HRGMv2_2320_4_18 16945 18315 + 2.A.66.1.22
CAZyme HRGMv2_2320_4 HRGMv2_2320_4_19 18329 19801 + GH77
pfam HRGMv2_2320_4 HRGMv2_2320_4_20 19816 20475 + TENA_THI-4
TC HRGMv2_2320_4 HRGMv2_2320_4_21 20478 21230 + 3.A.1.17.8
TC HRGMv2_2320_4 HRGMv2_2320_4_22 21227 21976 + 3.A.1.17.8
STP HRGMv2_2320_4 HRGMv2_2320_4_23 22068 22607 + ANTAR
TC HRGMv2_2320_4 HRGMv2_2320_4_24 22657 24027 + 2.A.66.1.9
TC HRGMv2_2320_4 HRGMv2_2320_4_25 24076 24780 - 2.A.122.1.6
TC HRGMv2_2320_4 HRGMv2_2320_4_26 24780 25148 - 1.E.14.1.17
Gene ID: HRGMv2_2320_4_18
Type: TC
Location: 16945 - 18315 (+)
Gene ID: HRGMv2_2320_4_19
Type: CAZyme
Location: 18329 - 19801 (+)
Gene ID: HRGMv2_2320_4_20
Type: pfam
Location: 19816 - 20475 (+)
Gene ID: HRGMv2_2320_4_21
Type: TC
Location: 20478 - 21230 (+)
Gene ID: HRGMv2_2320_4_22
Type: TC
Location: 21227 - 21976 (+)
Gene ID: HRGMv2_2320_4_23
Type: STP
Location: 22068 - 22607 (+)
Gene ID: HRGMv2_2320_4_24
Type: TC
Location: 22657 - 24027 (+)
Gene ID: HRGMv2_2320_4_25
Type: TC
Location: 24076 - 24780 (-)
Gene ID: HRGMv2_2320_4_26
Type: TC
Location: 24780 - 25148 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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