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Cluster: HRGMv2_2318_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2318_24 HRGMv2_2318_24_2 1253 2209 + 3.A.1.34.1
TC HRGMv2_2318_24 HRGMv2_2318_24_3 2234 3181 + 3.A.1.34.1
TC HRGMv2_2318_24 HRGMv2_2318_24_4 3169 3963 + 3.A.1.34.1
pfam HRGMv2_2318_24 HRGMv2_2318_24_5 4089 4601 - DUF4430
TC HRGMv2_2318_24 HRGMv2_2318_24_6 4666 5352 - 3.A.1.32.2
TC HRGMv2_2318_24 HRGMv2_2318_24_7 5339 6967 - 3.A.1.32.2
TC HRGMv2_2318_24 HRGMv2_2318_24_8 6940 7803 - 3.A.1.32.2
STP HRGMv2_2318_24 HRGMv2_2318_24_9 7985 10450 + Pyr_redox_2 | Rhodanese
TF HRGMv2_2318_24 HRGMv2_2318_24_10 10518 12035 - HTH_AraC
TC HRGMv2_2318_24 HRGMv2_2318_24_11 12007 13749 - 8.A.59.2.1
CAZyme HRGMv2_2318_24 HRGMv2_2318_24_12 13943 15265 + GH29
STP HRGMv2_2318_24 HRGMv2_2318_24_13 15434 16750 + SBP_bac_1
TC HRGMv2_2318_24 HRGMv2_2318_24_14 16771 17655 + 3.A.1.1.36
TC HRGMv2_2318_24 HRGMv2_2318_24_15 17668 18501 + 3.A.1.1.18
pfam HRGMv2_2318_24 HRGMv2_2318_24_16 18576 19439 + YitT_membrane | DUF2179
TC HRGMv2_2318_24 HRGMv2_2318_24_17 19456 20205 + 9.B.158.1.1
Gene ID: HRGMv2_2318_24_2
Type: TC
Location: 1253 - 2209 (+)
Gene ID: HRGMv2_2318_24_3
Type: TC
Location: 2234 - 3181 (+)
Gene ID: HRGMv2_2318_24_4
Type: TC
Location: 3169 - 3963 (+)
Gene ID: HRGMv2_2318_24_5
Type: pfam
Location: 4089 - 4601 (-)
Gene ID: HRGMv2_2318_24_6
Type: TC
Location: 4666 - 5352 (-)
Gene ID: HRGMv2_2318_24_7
Type: TC
Location: 5339 - 6967 (-)
Gene ID: HRGMv2_2318_24_8
Type: TC
Location: 6940 - 7803 (-)
Gene ID: HRGMv2_2318_24_9
Type: STP
Location: 7985 - 10450 (+)
Gene ID: HRGMv2_2318_24_10
Type: TF
Location: 10518 - 12035 (-)
Gene ID: HRGMv2_2318_24_11
Type: TC
Location: 12007 - 13749 (-)
Gene ID: HRGMv2_2318_24_12
Type: CAZyme
Location: 13943 - 15265 (+)
Gene ID: HRGMv2_2318_24_13
Type: STP
Location: 15434 - 16750 (+)
Gene ID: HRGMv2_2318_24_14
Type: TC
Location: 16771 - 17655 (+)
Gene ID: HRGMv2_2318_24_15
Type: TC
Location: 17668 - 18501 (+)
Gene ID: HRGMv2_2318_24_16
Type: pfam
Location: 18576 - 19439 (+)
Gene ID: HRGMv2_2318_24_17
Type: TC
Location: 19456 - 20205 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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