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Cluster: HRGMv2_2318_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2318_16 HRGMv2_2318_16_2 668 2110 - GH18
STP HRGMv2_2318_16 HRGMv2_2318_16_3 2143 3645 - SBP_bac_1
TC HRGMv2_2318_16 HRGMv2_2318_16_4 3701 4645 - 3.A.1.1.11
TC HRGMv2_2318_16 HRGMv2_2318_16_5 4672 5568 - 3.A.1.1.11
pfam HRGMv2_2318_16 HRGMv2_2318_16_6 5558 8086 - DUF5696
pfam HRGMv2_2318_16 HRGMv2_2318_16_7 8132 10243 - NHL | Yip1
TC HRGMv2_2318_16 HRGMv2_2318_16_8 10268 11155 - 3.A.1.1.39
NULL(UNKNOWN) HRGMv2_2318_16 HRGMv2_2318_16_9 11175 12122 - NULL(UNKNOWN)
[View Structural Homologs]
STP HRGMv2_2318_16 HRGMv2_2318_16_10 12151 15045 - SBP_bac_1
CAZyme HRGMv2_2318_16 HRGMv2_2318_16_11 15077 16069 - GH18
Gene ID: HRGMv2_2318_16_2
Type: CAZyme
Location: 668 - 2110 (-)
Gene ID: HRGMv2_2318_16_3
Type: STP
Location: 2143 - 3645 (-)
Gene ID: HRGMv2_2318_16_4
Type: TC
Location: 3701 - 4645 (-)
Gene ID: HRGMv2_2318_16_5
Type: TC
Location: 4672 - 5568 (-)
Gene ID: HRGMv2_2318_16_6
Type: pfam
Location: 5558 - 8086 (-)
Gene ID: HRGMv2_2318_16_7
Type: pfam
Location: 8132 - 10243 (-)
Gene ID: HRGMv2_2318_16_8
Type: TC
Location: 10268 - 11155 (-)
Gene ID: HRGMv2_2318_16_9
Type:
Location: 11175 - 12122 (-)
Gene ID: HRGMv2_2318_16_10
Type: STP
Location: 12151 - 15045 (-)
Gene ID: HRGMv2_2318_16_11
Type: CAZyme
Location: 15077 - 16069 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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