Cluster: HRGMv2_2318_CGC1
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2318
- CGC Family ID: CGCFAM_10032
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2318_1 | HRGMv2_2318_1_1 | 79 | 564 | - | 4.A.1.1.1 |
| TC | HRGMv2_2318_1 | HRGMv2_2318_1_2 | 631 | 2085 | - | 4.A.1.1.7 |
| pfam | HRGMv2_2318_1 | HRGMv2_2318_1_3 | 2136 | 2957 | - | PRD | PRD | CAT_RBD |
| TC | HRGMv2_2318_1 | HRGMv2_2318_1_4 | 2970 | 4613 | - | 8.A.7.1.1 |
| TC | HRGMv2_2318_1 | HRGMv2_2318_1_5 | 4631 | 4888 | - | 4.A.2.1.19 |
| sulfatase | HRGMv2_2318_1 | HRGMv2_2318_1_6 | 5134 | 5898 | - | S1_9 |
| CAZyme | HRGMv2_2318_1 | HRGMv2_2318_1_7 | 5885 | 7036 | - | CE9 |
| CAZyme | HRGMv2_2318_1 | HRGMv2_2318_1_8 | 7092 | 9704 | - | GH94 |
| CAZyme | HRGMv2_2318_1 | HRGMv2_2318_1_9 | 9780 | 11390 | - | GH3 |
| pfam | HRGMv2_2318_1 | HRGMv2_2318_1_10 | 11524 | 12936 | - | PGM_PMM_IV | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III |
| TC | HRGMv2_2318_1 | HRGMv2_2318_1_11 | 12995 | 13885 | - | 3.A.1.1.18 |
| TC | HRGMv2_2318_1 | HRGMv2_2318_1_12 | 13913 | 14782 | - | 3.A.1.1.41 |
| TF | HRGMv2_2318_1 | HRGMv2_2318_1_13 | 15330 | 16085 | - | HTH_AraC |
| TC | HRGMv2_2318_1 | HRGMv2_2318_1_14 | 16104 | 17987 | - | 8.A.59.2.1 |
Gene ID: HRGMv2_2318_1_1
Type: TC
Location: 79 - 564 (-)
Type: TC
Location: 79 - 564 (-)
Gene ID: HRGMv2_2318_1_2
Type: TC
Location: 631 - 2085 (-)
Type: TC
Location: 631 - 2085 (-)
Gene ID: HRGMv2_2318_1_3
Type: pfam
Location: 2136 - 2957 (-)
Type: pfam
Location: 2136 - 2957 (-)
Gene ID: HRGMv2_2318_1_4
Type: TC
Location: 2970 - 4613 (-)
Type: TC
Location: 2970 - 4613 (-)
Gene ID: HRGMv2_2318_1_5
Type: TC
Location: 4631 - 4888 (-)
Type: TC
Location: 4631 - 4888 (-)
Gene ID: HRGMv2_2318_1_6
Type: sulfatase
Location: 5134 - 5898 (-)
Type: sulfatase
Location: 5134 - 5898 (-)
Gene ID: HRGMv2_2318_1_7
Type: CAZyme
Location: 5885 - 7036 (-)
Type: CAZyme
Location: 5885 - 7036 (-)
Gene ID: HRGMv2_2318_1_8
Type: CAZyme
Location: 7092 - 9704 (-)
Type: CAZyme
Location: 7092 - 9704 (-)
Gene ID: HRGMv2_2318_1_9
Type: CAZyme
Location: 9780 - 11390 (-)
Type: CAZyme
Location: 9780 - 11390 (-)
Gene ID: HRGMv2_2318_1_10
Type: pfam
Location: 11524 - 12936 (-)
Type: pfam
Location: 11524 - 12936 (-)
Gene ID: HRGMv2_2318_1_11
Type: TC
Location: 12995 - 13885 (-)
Type: TC
Location: 12995 - 13885 (-)
Gene ID: HRGMv2_2318_1_12
Type: TC
Location: 13913 - 14782 (-)
Type: TC
Location: 13913 - 14782 (-)
Gene ID: HRGMv2_2318_1_13
Type: TF
Location: 15330 - 16085 (-)
Type: TF
Location: 15330 - 16085 (-)
Gene ID: HRGMv2_2318_1_14
Type: TC
Location: 16104 - 17987 (-)
Type: TC
Location: 16104 - 17987 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Cellulosilyticaceae
Genus
Zhenhengia
Species
Zhenhengia yiwuensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.