Cluster: HRGMv2_2314_CGC4
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2314
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2314_3 | HRGMv2_2314_3_52 | 48581 | 51142 | - | 3.A.3.5.15 |
| pfam | HRGMv2_2314_3 | HRGMv2_2314_3_53 | 51191 | 51814 | - | FtrD-like |
| NULL(UNKNOWN) | HRGMv2_2314_3 | HRGMv2_2314_3_54 | 51774 | 51908 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2314_3 | HRGMv2_2314_3_55 | 51920 | 53956 | - | 5.A.1.6.1 |
| STP | HRGMv2_2314_3 | HRGMv2_2314_3_56 | 54097 | 54714 | - | Sigma70_r2 | Sigma70_r4 |
| pfam | HRGMv2_2314_3 | HRGMv2_2314_3_57 | 54784 | 55395 | - | DUF5662 |
| CAZyme | HRGMv2_2314_3 | HRGMv2_2314_3_58 | 55399 | 57339 | - | GH13_11 |
Gene ID: HRGMv2_2314_3_52
Type: TC
Location: 48581 - 51142 (-)
Type: TC
Location: 48581 - 51142 (-)
Gene ID: HRGMv2_2314_3_53
Type: pfam
Location: 51191 - 51814 (-)
Type: pfam
Location: 51191 - 51814 (-)
Gene ID: HRGMv2_2314_3_54
Type:
Location: 51774 - 51908 (-)
Type:
Location: 51774 - 51908 (-)
Gene ID: HRGMv2_2314_3_55
Type: TC
Location: 51920 - 53956 (-)
Type: TC
Location: 51920 - 53956 (-)
Gene ID: HRGMv2_2314_3_56
Type: STP
Location: 54097 - 54714 (-)
Type: STP
Location: 54097 - 54714 (-)
Gene ID: HRGMv2_2314_3_57
Type: pfam
Location: 54784 - 55395 (-)
Type: pfam
Location: 54784 - 55395 (-)
Gene ID: HRGMv2_2314_3_58
Type: CAZyme
Location: 55399 - 57339 (-)
Type: CAZyme
Location: 55399 - 57339 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia sp905206195
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.