Cluster: HRGMv2_2314_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2314
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2314_2 | HRGMv2_2314_2_80 | 79242 | 80597 | + | 2.A.86.1.8 |
| STP | HRGMv2_2314_2 | HRGMv2_2314_2_81 | 80756 | 83443 | + | TPR_2 |
| CAZyme | HRGMv2_2314_2 | HRGMv2_2314_2_82 | 83471 | 85372 | + | CBM48 | GH13_9 |
| pfam | HRGMv2_2314_2 | HRGMv2_2314_2_83 | 85528 | 88761 | + | DUF6240 | DUF6240 |
| pfam | HRGMv2_2314_2 | HRGMv2_2314_2_84 | 88756 | 89451 | - | Amidase_3 |
| CAZyme | HRGMv2_2314_2 | HRGMv2_2314_2_85 | 89536 | 91302 | - | GH18 |
Gene ID: HRGMv2_2314_2_80
Type: TC
Location: 79242 - 80597 (+)
Type: TC
Location: 79242 - 80597 (+)
Gene ID: HRGMv2_2314_2_81
Type: STP
Location: 80756 - 83443 (+)
Type: STP
Location: 80756 - 83443 (+)
Gene ID: HRGMv2_2314_2_82
Type: CAZyme
Location: 83471 - 85372 (+)
Type: CAZyme
Location: 83471 - 85372 (+)
Gene ID: HRGMv2_2314_2_83
Type: pfam
Location: 85528 - 88761 (+)
Type: pfam
Location: 85528 - 88761 (+)
Gene ID: HRGMv2_2314_2_84
Type: pfam
Location: 88756 - 89451 (-)
Type: pfam
Location: 88756 - 89451 (-)
Gene ID: HRGMv2_2314_2_85
Type: CAZyme
Location: 89536 - 91302 (-)
Type: CAZyme
Location: 89536 - 91302 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia sp905206195
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.