Cluster: HRGMv2_2314_CGC28
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2314
- CGC Family ID: CGCFAM_00039
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2314_26 | HRGMv2_2314_26_25 | 27027 | 28337 | + | GH13_20 |
| peptidase | HRGMv2_2314_26 | HRGMv2_2314_26_26 | 28444 | 29979 | - | S01.UPC |
| NULL(UNKNOWN) | HRGMv2_2314_26 | HRGMv2_2314_26_27 | 30121 | 31575 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2314_26 | HRGMv2_2314_26_28 | 31683 | 32657 | - | GT2 |
| pfam | HRGMv2_2314_26 | HRGMv2_2314_26_29 | 32657 | 33757 | - | LytR_cpsA_psr |
| TC | HRGMv2_2314_26 | HRGMv2_2314_26_30 | 33769 | 33984 | - | 9.B.18.1.1 |
Gene ID: HRGMv2_2314_26_25
Type: CAZyme
Location: 27027 - 28337 (+)
Type: CAZyme
Location: 27027 - 28337 (+)
Gene ID: HRGMv2_2314_26_26
Type: peptidase
Location: 28444 - 29979 (-)
Type: peptidase
Location: 28444 - 29979 (-)
Gene ID: HRGMv2_2314_26_27
Type:
Location: 30121 - 31575 (-)
Type:
Location: 30121 - 31575 (-)
Gene ID: HRGMv2_2314_26_28
Type: CAZyme
Location: 31683 - 32657 (-)
Type: CAZyme
Location: 31683 - 32657 (-)
Gene ID: HRGMv2_2314_26_29
Type: pfam
Location: 32657 - 33757 (-)
Type: pfam
Location: 32657 - 33757 (-)
Gene ID: HRGMv2_2314_26_30
Type: TC
Location: 33769 - 33984 (-)
Type: TC
Location: 33769 - 33984 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia sp905206195
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2314_26_30 | vegetarian > omnivore | 1.44546 | 0.01047 |
| HRGMv2_2314_26_30 | vegetarian > vegan | 1.64624 | 0.01135 |